Journals Articles Conferences News About CLP
Submit a paper Email Alert
Search
Search
Articles
Journals
News
Advanced Search
Top Searches
2D MaterialsTransformation opticsQuantum PhotonicsSmall lasersSemiconductor UV PhotonicsSupersymmetric microring laser arrays

Photonics Research, Volume. 12, Issue 4, 740(2024)

Faster structured illumination microscopy using complementary encoding-based compressive imaging

Zhengqi Huang1, Yunhua Yao1,5、*, Yilin He1, Yu He1, Chengzhi Jin1, Mengdi Guo1, Dalong Qi1, Lianzhong Deng1, Zhenrong Sun1, Zhiyong Wang2,6、*, and Shian Zhang1,3,4,7、*
Author Affiliations
  • 1State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
  • 2School of Mathematical Sciences, University of Electronic Science and Technology of China, Chengdu 611731, China
  • 3Joint Research Center of Light Manipulation Science and Photonic Integrated Chip of East China Normal University and Shandong Normal University, East China Normal University, Shanghai 200241, China
  • 4Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan 030006, China
  • 5e-mail: yhyao@lps.ecnu.edu.cn
  • 6e-mail: zhywang@uestc.edu.cn
  • 7e-mail: sazhang@phy.ecnu.edu.cn
    • show less
    Full TextGet PDF
    Figures&Tables (6)
    Equations (5)
    References (46)
    Cited By (3)
    Tools
    Paper Information
    Topics
    References(46)

    [1] S. W. Hell, J. Wichmann. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt. Lett., 19, 780-782(1994).

    [2] H. Blom, J. Widengren. Stimulated emission depletion microscopy. Chem. Rev., 117, 7377-7427(2017).

    [3] D. Wildanger, R. Medda, L. Kastrup. A compact STED microscope providing 3D nanoscale resolution. J. Microsc., 236, 35-43(2009).

    [4] E. Betzig, G. H. Patterson, R. Sougrat. Imaging intracellular fluorescent proteins at nanometer resolution. Science, 313, 1642-1645(2006).

    [5] M. J. Rust, M. Bates, X. Zhuang. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods, 3, 793-795(2006).

    [6] S. T. Hess, T. P. K. Girirajan, M. D. Mason. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J., 91, 4258-4272(2006).

    [7] M. G. L. Gustafsson. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J. Micrsco., 198, 82-87(2000).

    [8] R. Heintzmann, T. Huser. Super-resolution structured illumination microscopy. Chem. Rev., 117, 13890-13908(2017).

    [9] J. Demmerle, C. Innocent, A. J. North. Strategic and practical guidelines for successful structured illumination microscopy. Nat. Protoc., 12, 988-1010(2017).

    [10] D. Li, L. Shao, B.-C. Chen. Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics. Science, 349, aab3500(2015).

    [11] X. Huang, J. Fan, L. Li. Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy. Nat. Biotechnol., 36, 451-459(2018).

    [12] Q. Chen, X. Shao, P. Ling. Quantitative analysis of interactive behavior of mitochondria and lysosomes using structured illumination microscopy. Biomaterials, 250, 120059(2020).

    [13] A. V. Weigel, C. L. Chang, G. Shtengel. ER-to-Golgi protein delivery through an interwoven, tubular network extending from ER. Cell, 184, 2412-2429(2021).

    [14] F. Strohl, C. F. Kaminski. Speed limits of structured illumination microscopy. Opt. Lett., 42, 2511-2514(2017).

    [15] F. Orieux, E. Sepulveda, V. Loriette. Bayesian estimation for optimized structured illumination microscopy. IEEE Trans. Image Process., 21, 601-614(2012).

    [16] A. Lal, C. Shan, K. Zhao. A frequency domain SIM reconstruction algorithm using reduced number of images. IEEE T. Image Process., 27, 4555-4570(2018).

    [17] S. Dong, J. Liao, K. Guo. Resolution doubling with a reduced number of image acquisitions. Biomed. Opt. Express, 6, 2946-2952(2015).

    [18] C. Ling, C. Zhang, M. Wang. Fast structured illumination microscopy via deep learning. Photonics Res., 8, 1350-1359(2020).

    [19] W. Meiniel, P. Spinicelli, E. D. Angelini. Reducing data acquisition for fast structured illumination microscopy using compressed sensing. Proceedings of the IEEE International Symposium on Biomedical Imaging, 32-35(2017).

    [20] B. Ozgurun, M. Cetin. Compressed sensing structured illumination microscopy. Proceedings of the Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 1828-1831(2020).

    [21] X. Yuan, D. J. Brady, A. K. Katsaggelos. Snapshot compressive imaging: theory, algorithms, and applications. IEEE Signal Process. Mag., 38, 65-88(2021).

    [22] Y. He, Y. Yao, D. Qi. High-speed super-resolution imaging with compressive imaging-based structured illumination microscopy. Opt. Express, 30, 14287-14299(2022).

    [23] R. G. Baraniuk. Compressive sensing. IEEE Signal Process. Mag., 24, 118-121(2007).

    [24] R. G. Baraniuk, V. Cevher, M. F. Duarte. Model-based compressive sensing. IEEE Trans. Inf. Theory, 56, 1982-2001(2010).

    [25] P. Llull, X. Liao, X. Yuan. Coded aperture compressive temporal imaging. Opt. Express, 21, 10526-10545(2013).

    [26] M. Qiao, X. Yuan. Coded aperture compressive temporal imaging using complementary codes and untrained neural networks for high-quality reconstruction. Opt. Lett., 48, 109-112(2023).

    [27] S. Boyd, N. Parikh, E. Chu. Distributed optimization and statistical learning via the alternating direction method of multipliers. Found. Trends Mach. Learn., 3, 1-122(2010).

    [28] S. H. Chan, X. Wang, O. A. Elgendy. “Plug-and-play ADMM for image restoration: fixed-point convergence and applications. IEEE Trans. Comput. Imaging, 3, 84-98(2017).

    [29] X. Yuan, Y. Liu, J. Suo. Plug-and-play algorithms for video snapshot compressive imaging. IEEE Trans. Pattern Anal. Mach. Intell., 44, 7093-7111(2022).

    [30] K. Zhang, Y. Li, W. Zuo. Plug-and-play image restoration with deep denoiser prior. IEEE Trans. Pattern Anal. Mach. Intell., 44, 6360-6376(2022).

    [31] K. Zhang, W. Zuo, L. Zhang. Deep plug-and-play super-resolution for arbitrary blur kernels. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 1671-1681(2019).

    [32] I. J. Myung. Tutorial on maximum likelihood estimation. J. Math. Psychol., 47, 90-100(2003).

    [33] Y. Wang, J. Yang, W. Yin. A new alternating minimization algorithm for total variation image reconstruction. SIAM J. Imaging Sci., 1, 248-272(2008).

    [34] A. Lal, C. Shan, P. Xi. Structured illumination microscopy image reconstruction algorithm. IEEE J. Sel. Top. Quantum Electron., 22, 6803414(2016).

    [35] X. Chen, S. Zhong, Y. Hou. Superresolution structured illumination microscopy reconstruction algorithms: a review. Light Sci. Appl., 12, 172(2023).

    [36] G. Wen, S. Li, L. Wang. High-fidelity structured illumination microscopy by point-spread-function engineering. Light Sci. Appl., 10, 70(2021).

    [37] A. Descloux, K. S. Grußmayer, A. Radenovic. Parameter-free image resolution estimation based on decorrelation analysis. Nat. Methods, 16, 918-924(2019).

    [38] M. Schrader, L. F. Godinho, J. L. Costello. The different facets of organelle interplay: an overview of organelle interactions. Front. Cell Dev. Biol., 3, 56(2015).

    [39] R. D. Vale. The molecular motor toolbox for intracellular transport. Cell, 112, 467-480(2003).

    [40] Y. Gong, C. Huang, J. Z. Li. High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor. Science, 350, 1361-1366(2015).

    [41] P. Wang, L. Wang, M. Qiao. Full-resolution and full-dynamic-range coded aperture compressive temporal imaging. Opt. Lett., 48, 4813-4816(2023).

    [42] M. G. L. Gustafsson, L. Shao, P. M. Carlton. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophys. J., 102, 13081-13086(2005).

    [43] L. Schermelleh, P. M. Carlton, S. Haase. Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science, 320, 1332-1336(2008).

    [44] M. G. L. Gustafsson. Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution. Proc. Natl. Acad. Sci. USA, 102, 13081-13086(2005).

    [45] H. Zhang, M. Zhao, L. Peng. Nonlinear structured illumination microscopy by surface plasmon enhanced stimulated emission depletion. Opt. Express, 19, 24783-24794(2011).

    [46] Z. Huang. Data for CECI-SIM(2024).

    Tools

    Get Citation

    Copy Citation Text

    Zhengqi Huang, Yunhua Yao, Yilin He, Yu He, Chengzhi Jin, Mengdi Guo, Dalong Qi, Lianzhong Deng, Zhenrong Sun, Zhiyong Wang, Shian Zhang, "Faster structured illumination microscopy using complementary encoding-based compressive imaging," Photonics Res. 12, 740 (2024)

    Download Citation

    EndNote(RIS)BibTexPlain Text
    Set citation alerts for article
    Save article for my favorites
    Paper Information

    Category: Imaging Systems, Microscopy, and Displays

    Received: Dec. 13, 2023

    Accepted: Jan. 30, 2024

    Published Online: Mar. 22, 2024

    The Author Email: Yunhua Yao (yhyao@lps.ecnu.edu.cn), Zhiyong Wang (zhywang@uestc.edu.cn), Shian Zhang (sazhang@phy.ecnu.edu.cn)

    DOI:10.1364/PRJ.515895

    CSTR:32188.14.PRJ.515895

    Topics

    laser devices and laser physics
    Lasers and Laser Optics
    Laser physics
    laser manufacturing
    Instrumentation, Measurement and Metrology