Chinese Journal of Lasers, Volume. 50, Issue 9, 0907401(2023)
Rapid Analysis Method for Liquid‐Liquid Phase Separation Condensate Morphology Based on Sparse Data
[1] Brangwynne C P. Phase transitions and size scaling of membrane-less organelles[J]. The Journal of Cell Biology, 203, 875-881(2013).
[2] Hyman A A, Weber C A, Jülicher F. Liquid-liquid phase separation in biology[J]. Annual Review of Cell and Developmental Biology, 30, 39-58(2014).
[3] Molliex A, Temirov J, Lee J H et al. Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization[J]. Cell, 163, 123-133(2015).
[4] Banani S F, Lee H O, Hyman A A et al. Biomolecular condensates: organizers of cellular biochemistry[J]. Nature Reviews Molecular Cell Biology, 18, 285-298(2017).
[5] Alberti S, Gladfelter A, Mittag T. Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates[J]. Cell, 176, 419-434(2019).
[6] Wu R B, Li P L. Liquid-liquid phase separation and biomolecular condensates[J]. Chinese Science Bulletin, 64, 2285-2291(2019).
[7] Li P L, Banjade S, Cheng H C et al. Phase transitions in the assembly of multivalent signalling proteins[J]. Nature, 483, 336-340(2012).
[8] Mehta S, Zhang J. Liquid-liquid phase separation drives cellular function and dysfunction in cancer[J]. Nature Reviews Cancer, 22, 239-252(2022).
[9] Banani S F, Rice A M, Peeples W B et al. Compositional control of phase-separated cellular bodies[J]. Cell, 166, 651-663(2016).
[10] Langdon E M, Gladfelter A S. A new lens for RNA localization: liquid-liquid phase separation[J]. Annual Review of Microbiology, 72, 255-271(2018).
[11] Schmidt H B, Görlich D. Transport selectivity of nuclear pores, phase separation, and membraneless organelles[J]. Trends in Biochemical Sciences, 41, 46-61(2016).
[12] Wegmann S, Eftekharzadeh B, Tepper K et al. Tau protein liquid-liquid phase separation can initiate tau aggregation[J]. The EMBO Journal, 37, e98049(2018).
[13] Boulay G, Sandoval G J, Riggi N et al. Cancer-specific retargeting of BAF complexes by a prion-like domain[J]. Cell, 171, 163-178.e19(2017).
[14] Luby-Phelps K. The physical chemistry of cytoplasm and its influence on cell function: an update[J]. Molecular Biology of the Cell, 24, 2593-2596(2013).
[15] Guan Y J, Ma X C. Application of optical microscopic imaging technology in liquid-liquid separation research[J]. Journal of Sun Yat-Sen University (Medical Sciences), 43, 504-510(2022).
[16] Setru S U, Gouveia B, Alfaro-Aco R et al. A hydrodynamic instability drives protein droplet formation on microtubules to nucleate branches[J]. Nature Physics, 17, 493-498(2021).
[17] Bai C, Peng T, Min J W et al. Dual-wavelength in-line digital holography with untrained deep neural networks[J]. Photonics Research, 9, 2501-2510(2021).
[18] Park J, Brady D J, Zheng G A et al. Review of bio-optical imaging systems with a high space-bandwidth product[J]. Advanced Photonics, 3, 044001(2021).
[19] Yang Z W, Zhang L, Lü N et al. Progress of three-dimensional, label-free quantitative imaging of refractive index in biological samples[J]. Chinese Journal of Lasers, 49, 0507201(2022).
[20] Zeng M L, Shang Y, Araki Y et al. Phase transition in postsynaptic densities underlies formation of synaptic complexes and synaptic plasticity[J]. Cell, 166, 1163-1175(2016).
[21] Ji Y, Huang J B, Li X et al. Fast three-dimensional morphological reconstruction algorithm of phase objects based on orthogonal sampling[J]. Acta Optica Sinica, 41, 2312006(2021).
[22] Li T T, Feng D W, Li Q et al. Quantitative detection method of fluorescence immunochromatography based on microscopic digital image[J]. Chinese Journal of Lasers, 47, 1107001(2020).
[23] He W L, Dou J T, Yang Z M et al. Sequential shift absolute phase aberration calibration in digital holographic phase imaging based on Chebyshev polynomials fitting[J]. IEEE Photonics Journal, 12, 6900111(2019).
[24] Tang M, Liu C, Wang X P. Autofocusing and image fusion for multi-focus plankton imaging by digital holographic microscopy[J]. Applied Optics, 59, 333-345(2020).
[25] Zheng N N, Huang G. Small animal living three-dimensional optical imaging system and its quantitative analysis of breast cancer[J]. Acta Laser Biology Sinica, 31, 215-223(2022).
[26] Gong L R, Jia X Y, Xu Y Y et al. Three-dimensional morphological reconstruction of nucleated cell based on orthogonal dual-wavelength measurement[J]. Chinese Journal of Lasers, 49, 2007206(2022).
[27] Majeed H, Sridharan S, Mir M et al. Quantitative phase imaging for medical diagnosis[J]. Journal of Biophotonics, 10, 177-205(2017).
Get Citation
Copy Citation Text
Xiyu Jia, Lingran Gong, Yuanyuan Xu, Ying Ji. Rapid Analysis Method for Liquid‐Liquid Phase Separation Condensate Morphology Based on Sparse Data[J]. Chinese Journal of Lasers, 2023, 50(9): 0907401
Category: Bio-Optical Sensing and Manipulation
Received: Jan. 9, 2023
Accepted: Feb. 21, 2023
Published Online: Apr. 24, 2023
The Author Email: Ji Ying (jy@ujs.edu.cn)