Laser & Optoelectronics Progress, Volume. 59, Issue 6, 0617019(2022)

Automated Analysis Methods for Autofluorescence Lifetime Microscopic Images of Yeast

Jiahui Zhong1, Junxin Wu2, Yawei Kong2, Wenhua Su2, Jiong Ma1,2、*, and Lan Mi1,2、**
Author Affiliations
  • 1Institute of Biomedical Engineering and Technology, Academy for Engineer and Technology, Fudan University, Shanghai 200433, China
  • 2Department of Optical Science and Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, China
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    Figures & Tables(8)
    Structure of the segmentation network based on deep supervision and U-Net
    Growth curve of the SC cells
    Segmentation results of different models. (a) Image 1; (b) image 2; (c) image 3
    FLIM images, distribution curves and statistical values of yeast cells at different ages. (a) FLIM images of tm; (b) FLIM images of a2; (c) distribution curve of tm、a2 and cross-sectional area; (d) statistical average value of tm、a2 and cross-sectional area
    Visualization results of t-SNE method. (a) tm map; (b) a2 map; (c) tm and a2 maps
    Clustering results and data distribution for difference feature input。(a) Input features are tm and a2; (b) two-dimensional feature distribution at 6 h; (c) two-dimensional feature distribution at 24 h; (d) two-dimensional feature distribution at 72 h; (e) input feature is tm, a2 and cross-sectional area; (f) three-dimensional feature distribution at 6 h; (g) three-dimensional feature distribution at 24 h; (h) three-dimensional feature distribution at 72 h
    • Table 1. Segmentation results of different segmentation models

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      Table 1. Segmentation results of different segmentation models

      ModelIOUDice score
      Otsu0.6140.756
      U-Net0.8230.903
      U-Net+watershed0.8250.904
      DS-UNet0.8300.907
      DS-UNet+watershed0.8320.908
    • Table 2. Proportion of the number of cells in different clusters in different input characteristics

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      Table 2. Proportion of the number of cells in different clusters in different input characteristics

      Feature6 h24 h72 h
      Cluster 1Cluster 2Cluster 1Cluster 2Cluster 1Cluster 2
      tm&a2(Area)93771292575
      CNN-tm891172282674
      CNN-a2821861391486
      CNN-tm&a2(Area)792158421387
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    Jiahui Zhong, Junxin Wu, Yawei Kong, Wenhua Su, Jiong Ma, Lan Mi. Automated Analysis Methods for Autofluorescence Lifetime Microscopic Images of Yeast[J]. Laser & Optoelectronics Progress, 2022, 59(6): 0617019

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    Paper Information

    Category: Medical Optics and Biotechnology

    Received: Nov. 22, 2021

    Accepted: Dec. 31, 2021

    Published Online: Mar. 8, 2022

    The Author Email: Jiong Ma (lanmi@fudan.edu.cn), Lan Mi (jiongma@fudan.edu.cn)

    DOI:10.3788/LOP202259.0617019

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