Journal of Radiation Research and Radiation Processing, Volume. 42, Issue 1, 010301(2024)

Genetic evolution of 16S rRNA in Escherichia coli induced by low-energy N+ implantation

Chao TANG1, Ting WANG2, Xuerui WANG1, Minghui CHEN3, and Changlong CAI1、*
Author Affiliations
  • 1School of Optoelectronic Engineering, Xi'an University of Technology, Xi'an 710021, China
  • 2College of Food and Biological Engineering, Shaanxi University of Science & Technology, Xi'an 710021, China
  • 3China Northern Vehicle Research Institute, Beijing 100072, China
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    References(24)

    [1] ZHANG Qi, LI Baozhen, ZHENG Xuemei et al. Research hotspots of multidrug-resistant organisms in China from 2000 to 2020: a visualization analysis[J]. Chinese General Practice, 25, 2960-2964(2022).

    [2] ZHAO Ruifang, WANG Hai, JI Tianjiao et al. A biodegradable nano-polypeptide polymer with high efficiency and broad-spectrum antibacterial activity[J]. Chinese Science Bulletin, 60, 1328(2015).

    [3] CAI Changlong, Jie LYU, MAO Peihong et al. DOB 16S rRNA gene mutation and evolution driven by low-energy nitrogen ion beam implantation[J]. Journal of Xi’an Technological University, 37, 781-786(2017).

    [4] LIU Minrui, LIN Pengwu, Qi Xing'e et al. Phylogenetic and diversity analysis of Acidithiobacillus spp. based on 16S rRNA and RubisCO genes homologues[J]. Acta Microbiologica Sinica, 56, 664-679(2016).

    [5] Lagesen K, Hallin P, Rødland E A et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes[J]. Nucleic Acids Research, 35, 3100-3108(2007).

    [7] Rozhko T V, Guseynov O A, Guseynova V E et al. Is bacterial luminescence response to low-dose radiation associated with mutagenicity?[J]. Journal of Environmental Radioactivity, 177, 261-265(2017).

    [8] BAO Shanshan, MAO Peihong. Study on 16S rRNA gene of desert oligotrophic bacteria recombined by ion beam based on de novo sequencing[J]. Genomics and Applied Biology, 36, 277-280(2017).

    [9] Lepcha R T, Poddar A, Schumann P et al. Comparative 16S rRNA signatures and multilocus sequence analysis for the genus Salinicola and description of Salinicola acroporae sp. nov, isolated from coral Acropora digitifera[J]. Antonie Van Leeuwenhoek, 108, 59-73(2015).

    [10] Prjibelski A, Antipov D, Meleshko D et al. Using SPAdes de novo assembler[J]. Current Protocols in Bioinformatics, 70, e102(2020).

    [11] Thompson J D, Gibson T J, Higgins D G. Multiple sequence alignment using ClustalW and ClustalX[J/OL]. Current Protocols in Bioinformatics, 2, 2-3(2003).

    [12] Edgar R C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity[J]. BMC Bioinformatics, 5, 113(2004).

    [13] Huelsenbeck J P, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees[J]. Bioinformatics, 17, 754-755(2001).

    [14] Clewley J P, Arnold C. MEGALIGN. The multiple alignment module of LASERGENE[J]. Methods in Molecular Biology, 70, 119-129(1997).

    [15] Gruber A R, Bernhart S H, Lorenz R. The ViennaRNA web services[J]. Methods in Molecular Biology, 1269, 307-326(2015).

    [16] Lorenz R, Hofacker I L, Stadler P F. RNA folding with hard and soft constraints[J]. Algorithms for Molecular Biology: AMB, 11, 8(2016).

    [17] Pal C, Bengtsson-Palme J, Rensing C et al. BacMet: antibacterial biocide and metal resistance genes database[J]. Nucleic Acids Research, 42, D737-D743(2014).

    [18] Yin X L, Jiang X T, Chai B L et al. ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes[J]. Bioinformatics, 34, 2263-2270(2018).

    [19] Melvin P, Weinstein , Thoms J K, James S L et al. Performance standards for antimicrobial susceptibility testing[M](2020).

    [20] YU Zengliang[M]. Introduction to ion beam biotechnology, 129-140(2006).

    [21] Bobay L M, Ochman H. Impact of recombination on the base composition of bacteria and Archaea[J]. Molecular Biology and Evolution, 34, 2627-2636(2017).

    [22] LI Yanfen. Experimental study on drug resistance of Staphylococcus aureus induced by linezolid in vitro[D], 18-23(2013).

    [23] Mnich E, Ibran J, Chmiela M. Treatment of helicobacter pylori infections in the light of the increase of antibiotic resistance[J]. Postępy Higieny i Medycyny Doświadczalnej, 72, 143-158(2018).

    [24] WEN Xueqin, WU Fangcao, LIU Fang et al. Relationship between Helicobacter pylori resistance to tetracycline and 16S rDNA mutation[J]. Journal of Pathogen Biology, 14, 433-438(2019).

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    Chao TANG, Ting WANG, Xuerui WANG, Minghui CHEN, Changlong CAI. Genetic evolution of 16S rRNA in Escherichia coli induced by low-energy N+ implantation[J]. Journal of Radiation Research and Radiation Processing, 2024, 42(1): 010301

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    Paper Information

    Category: Research Articles

    Received: Oct. 4, 2023

    Accepted: Nov. 14, 2023

    Published Online: Mar. 27, 2024

    The Author Email: Changlong CAI (蔡长龙)

    DOI:10.11889/j.1000-3436.2023-0084

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