Chinese Journal of Lasers, Volume. 49, Issue 15, 1507206(2022)
Reconstruction Algorithm of Structured Light Illumination Microscopy Based on Similar Block Denoising and Empirical Mode Decomposition
[1] Zhao T Y, Wang Z J, Feng K et al. High-speed structured illumination microscopy and its applications[J]. Laser & Optoelectronics Progress, 57, 240001(2020).
[2] Liu Z, Luo Z W, Wang Z Y et al. Super-resolution fluorescence microscopy image reconstruction algorithm based on structured illumination[J]. Chinese Journal of Lasers, 48, 0307001(2021).
[3] Betzig E, Patterson G H, Sougrat R et al. Imaging intracellular fluorescent proteins at nanometer resolution[J]. Science, 313, 1642-1645(2006).
[4] Hess S T, Girirajan T P K, Mason M D. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy[J]. Biophysical Journal, 91, 4258-4272(2006).
[5] Rust M J, Bates M, Zhuang X W. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)[J]. Nature Methods, 3, 793-795(2006).
[6] Shroff H, Galbraith C G, Galbraith J A et al. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics[J]. Nature Methods, 5, 417-423(2008).
[7] Pan W H, Chen B L, Zhang J G et al. Compressed sensing STORM super-resolution image reconstruction based on noise correction-principal component analysis preprocessing algorithm[J]. Chinese Journal of Lasers, 47, 0207024(2020).
[8] Yang J Y, Dong H, Xing F L et al. Single-molecule localization super-resolution microscopy and its applications[J]. Laser & Optoelectronics Progress, 58, 1200001(2021).
[9] Hell S W, Wichmann J. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy[J]. Optics Letters, 19, 780-782(1994).
[10] Schwentker M A, Bock H, Hofmann M et al. Wide-field subdiffraction RESOLFT microscopy using fluorescent protein photoswitching[J]. Microscopy Research and Technique, 70, 269-280(2007).
[11] Klar T A, Jakobs S, Dyba M et al. Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission[J]. Proceedings of the National Academy of Sciences of the United States of America, 97, 8206-8210(2000).
[12] Chmyrov A, Keller J, Grotjohann T et al. Nanoscopy with more than 100, 000 ‘doughnuts’[J]. Nature Methods, 10, 737-740(2013).
[13] Gustafsson M G L, Shao L, Carlton P M et al. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination[J]. Biophysical Journal, 94, 4957-4970(2008).
[14] Huang X S, Fan J C, Li L J et al. Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy[J]. Nature Biotechnology, 36, 451-459(2018).
[15] Hao X, Yang Q, Kuang C F et al. Optical super-resolution imaging based on frequency shift[J]. Acta Optica Sinica, 41, 0111001(2021).
[16] Fan J C, Huang X S, Li L J et al. A protocol for structured illumination microscopy with minimal reconstruction artifacts[J]. Biophysics Reports, 5, 80-90(2019).
[17] Wicker K. Non-iterative determination of pattern phase in structured illumination microscopy using auto-correlations in Fourier space[J]. Optics Express, 21, 24692-24701(2013).
[18] Wicker K, Mandula O, Best G et al. Phase optimisation for structured illumination microscopy[J]. Optics Express, 21, 2032-2049(2013).
[19] Chu K Q, McMillan P J, Smith Z J et al. Image reconstruction for structured-illumination microscopy with low signal level[J]. Optics Express, 22, 8687-8702(2014).
[20] Zhao T Y, Hao H W, Wang Z J et al. Multi-color structured illumination microscopy for live cell imaging based on the enhanced image recombination transform algorithm[J]. Biomedical Optics Express, 12, 3474-3484(2021).
[21] Lal A, Shan C Y, Xi P. Structured illumination microscopy image reconstruction algorithm[J]. IEEE Journal of Selected Topics in Quantum Electronics, 22, 50-63(2016).
[22] Smith C S, Slotman J A, Schermelleh L et al. Structured illumination microscopy with noise-controlled image reconstructions[J]. Nature Methods, 18, 821-828(2021).
[23] Wen G, Li S M, Wang L B et al. High-fidelity structured illumination microscopy by point-spread-function engineering[J]. Light: Science & Applications, 10, 70(2021).
[24] Wang Z J, Zhao T Y, Hao H W et al. High-speed image reconstruction for optically sectioned, super-resolution structured illumination microscopy[J]. Advanced Photonics, 4, 026003(2022).
[25] Huang N E, Shen Z, Long S R et al. The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis[J]. Proceedings of the Royal Society of London Series A: Mathematical, Physical and Engineering Sciences, 454, 903-995(1998).
[26] Dabov K, Foi A, Egiazarian K. Video denoising by sparse 3D transform-domain collaborative filtering[C], 145-149(2007).
[27] Dabov K, Foi A, Katkovnik V et al. Image denoising by sparse 3-D transform-domain collaborative filtering[J]. IEEE Transactions on Image Processing, 16, 2080-2095(2007).
[28] Anscombe F J. The transformation of Poisson, binomial and negative-binomial data[J]. Biometrika, 35, 246-254(1948).
[29] Mäkitalo M, Foi A. A closed-form approximation of the exact unbiased inverse of the Anscombe variance-stabilizing transformation[J]. IEEE Transactions on Image Processing, 20, 2697-2698(2011).
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Zhenqi Dai, Xiuli Bi, Junchao Fan. Reconstruction Algorithm of Structured Light Illumination Microscopy Based on Similar Block Denoising and Empirical Mode Decomposition[J]. Chinese Journal of Lasers, 2022, 49(15): 1507206
Category: Biomedical Optical Imaging
Received: Apr. 21, 2022
Accepted: Jun. 1, 2022
Published Online: Jul. 19, 2022
The Author Email: Fan Junchao (fanjc@cqupt.edu.cn)