Molecular Plant, Volume. 18, Issue 8, 1245(2025)

BarleyOmics: A comprehensive multi-omics database of barley

Zhao Junheng, Xie Shanggeng, Zhang Chenyang, Hu Zengjie, Lu Xiangqian, Zheng Nannan, Fu Yujie, Yao Jie, Zhou Ping, Huang Danyin, Zhang Zhizhong, Li Mengdi, Shen Qiufang, Cai Shengguan, Zhang Guoping, Tan Cong, and Ye and Lingzhen
References(10)

[1] [1] Casas, A.M., Contreras-Moreira, B., Cantalapiedra, C.P., Sakuma, S., Gracia, M.P., Moralejo, M., Molina-Cano, J.L., Komatsuda, T., and Igartua, E.(2018). Resequencing theVrs1gene in Spanish barley landraces revealed reversion of six-rowed to two-rowed spike. Mol. Breed.38:51. https://doi.org/10.1007/s11032-018-0816-z.

[2] [2] Duan, P., Ni, S., Wang, J., Zhang, B., Xu, R., Wang, Y., Chen, H., Zhu, X., and Li, Y.(2015). Regulation ofOsGRF4by OsmiR396 controls grain size and yield in rice. Nat. Plants2:15203. https://doi.org/10.1038/nplants.2015.203.

[3] [3] Guo, W., Schreiber, M., Marosi, V.B., Bagnaresi, P., Jrgensen, M.E., Braune, K.B., Chalmers, K., Chapman, B., Dang, V., Dockter, C., et al.(2025). A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity. Nat. Genet.57:441-450. https://doi.org/10.1038/s41588-024-02069-y.

[4] [4] Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V.S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., et al.(2020). The barley pan-genome reveals the hidden legacy of mutation breeding. Nature588:284-289. https://doi.org/10.1038/s41586-020-2947-8.

[5] [5] Jayakodi, M., Lu, Q., Pidon, H., Rabanus-Wallace, M.T., Bayer, M., Lux, T., Guo, Y., Jaegle, B., Badea, A., Bekele, W., et al.(2024). Structural variation in the pangenome of wild and domesticated barley. Nature636:654-662. https://doi.org/10.1038/s41586-024-08187-1.

[6] [6] Jiang, C., Kan, J., Gao, G., Dockter, C., Li, C., Wu, W., Yang, P., and Stein, N.(2025). Barley2035: A decadal vision for barley research and breeding. Mol. Plant18:195-218. https://doi.org/10.1016/j.molp.2024.12.009.

[7] [7] Knig, P., Beier, S., Basterrechea, M., Schler, D., Arend, D., Mascher, M., Stein, N., Scholz, U., and Lange, M.(2020). BRIDGE - A Visual Analytics Web Tool for Barley Genebank Genomics. Front. Plant Sci.11:701. https://doi.org/10.3389/fpls.2020.00701.

[8] [8] Mascher, M., Wicker, T., Jenkins, J., Plott, C., Lux, T., Koh, C.S., Ens, J., Gundlach, H., Boston, L.B., Tulpov, Z., et al.(2021). Long-read sequence assembly: a technical evaluation in barley. Plant Cell33:1888-1906. https://doi.org/10.1093/plcell/koab077.

[9] [9] Sakuma, S., Pourkheirandish, M., Hensel, G., Kumlehn, J., Stein, N., Tagiri, A., Yamaji, N., Ma, J.F., Sassa, H., Koba, T., and Komatsuda, T.(2013). Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley. New Phytol.197:939-948. https://doi.org/10.1111/nph.12068.

[10] [10] Tan, C., Ye, L., Chen, J., Zhang, C., Zhou, P., Tong, C., Chen, Z., Waugh, R., Li, C., and He, T.(2025). A monophyletic origin of domesticated barley. Preprint at bioRxiv. https://doi.org/10.1101/2025.02.26.638035.

Tools

Get Citation

Copy Citation Text

Zhao Junheng, Xie Shanggeng, Zhang Chenyang, Hu Zengjie, Lu Xiangqian, Zheng Nannan, Fu Yujie, Yao Jie, Zhou Ping, Huang Danyin, Zhang Zhizhong, Li Mengdi, Shen Qiufang, Cai Shengguan, Zhang Guoping, Tan Cong, Ye and Lingzhen. BarleyOmics: A comprehensive multi-omics database of barley[J]. Molecular Plant, 2025, 18(8): 1245

Download Citation

EndNote(RIS)BibTexPlain Text
Save article for my favorites
Paper Information

Category:

Received: Apr. 9, 2025

Accepted: Aug. 25, 2025

Published Online: Aug. 25, 2025

The Author Email:

DOI:10.1016/j.molp.2025.07.002

Topics