Laser & Optoelectronics Progress, Volume. 62, Issue 2, 0237007(2025)

Microorganism Contour Segmentation Method Using Imaging Models and Fourier Descriptors

Hao Yang1,2、*, Shengbing Shi3, Liangliang Yao4, Dian Gui1,2, Lu Shi1,2, Jinyu Zhao1, and Haoran Meng1
Author Affiliations
  • 1Key Laboratory of Advanced Manufacturing of Optical Systems, Changchun Institute of Optics, Precision Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, Jilin , China
  • 2University of Chinese Academy of Sciences, Beijing 100049, China
  • 3Chinese People's Liberation Army Unit 63850, Baicheng 137000, Jilin , China
  • 4Army Equipment Department Military Representative Office in Chongqing Region, Kunming Branch, Kunming 650000, Yunnan , China
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    Figures & Tables(18)
    Underwater in situ holographic imaging system. (a) System optical path structure; (b) schematic of optical path; (c) physical drawing
    Partial holograms captured by the system
    Reconstruction results of hologram. (a) Pre-reconstruction resolution plate image; (b) post-reconstruction resolution plate image; (c) pre-reconstruction biological specimen image; (d) post-reconstruction biological specimen image; (e) pre-reconstruction underwater microbial 1 image; (f) post-reconstruction underwater microbial 1 image; (g) pre-reconstruction underwater microbial 2 image; (h) post-reconstruction underwater microbial 2 image
    Comparison of interference fringe filtering spectra. (a) Spatial domain image before filtering; (b) frequency domain image before filtering; (c) spatial domain image after filtering by traditional method; (d) frequency domain image after filtering by traditional method; (e) spatial domain image after filtering by improved method; (f) frequency domain image after filtering by improved method
    Interference stripe filtering effect. (a) Resolution plate image before filtering; (b) resolution plate image after filtering; (c) biological specimen image before filtering; (d) post-filtered biological specimen image; (e) pre-filtered biological specimen image; (f) post-filtered biological specimen image
    Underwater microbial contour segmentation network architecture
    Structure diagram of background scattering estimation module
    Structure diagram of direct transmission estimation module
    Network structure of contour segmentation task
    Local refinement algorithm
    Image fusion effect. (a) (b) (c) Images without water; (d) (e) (f) images with water; (g) (h) (i) annotation
    Comparison of contour representation capabilities
    Experimental errors. (a) Regularly shaped microorganisms; (b) irregularly shaped microorganisms
    Comparison of spatial continuity
    Errors of spatial continuity
    Segmentation results of different algorithms
    • Table 1. Confusion matrix

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      Table 1. Confusion matrix

      ItemTrue value
      PN
      Predictive valueP'TPFP
      N'FNTN
    • Table 2. Comparison of experimental results

      View table

      Table 2. Comparison of experimental results

      IndicatorU-NetMask-R-CNNStarDistProposed
      F1 score0.81780.85270.85390.8894
      IoU0.76580.74230.77830.7887
      PA0.79030.82510.85990.8608
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    Hao Yang, Shengbing Shi, Liangliang Yao, Dian Gui, Lu Shi, Jinyu Zhao, Haoran Meng. Microorganism Contour Segmentation Method Using Imaging Models and Fourier Descriptors[J]. Laser & Optoelectronics Progress, 2025, 62(2): 0237007

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    Paper Information

    Category: Digital Image Processing

    Received: Apr. 24, 2024

    Accepted: May. 22, 2024

    Published Online: Jan. 3, 2025

    The Author Email:

    DOI:10.3788/LOP241162

    CSTR:32186.14.LOP241162

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