Acta Laser Biology Sinica, Volume. 30, Issue 1, 59(2021)

Genome-wide Analysis of Radiation-induced Mutations in Rice Mutant

ZHANG Li1,2, ZHANG Yong1,2, ZHANG Yuanhai1,2, ZHANG Yiyan1,2, XIE Tao1,2, PENG Xuanming1,2, and YANG Zhen1,2
Author Affiliations
  • 1[in Chinese]
  • 2[in Chinese]
  • show less
    References(18)

    [6] [6] ACQUAAH G. Principles of plant genetics and breeding[M]. 2nd edition. John Wiley & Sons Press, 2012: 1-740.

    [7] [7] YUSUKE K, MAKOTO T F, HINAKO T, et al. Characterization of a heavy-ion induced white flower mutant of allotetraploid Nicotiana tabacum[J]. Plant Cell Reports, 2013, 32: 11-19.

    [8] [8] WANG J, LI X, LU D, et al. Photosynthetic effect in selenastrum capricornutum progeny after carbon-ion irradiation[J]. PLoS One, 2016, 11(2): e0149381.

    [11] [11] ZHANG J Z, LIU S R, HU C G. Identifying the genome-wide genetic variation between precocious trifoliate orange and its wild type and developing new markers for genetics research[J]. DNA Research,?2016, 23(4): 403-414.

    [12] [12] MUNOZ-AMATRIAIN M, EICHTEN S R, WICKER T, et al. Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome[J]. Genome Biology, 2013, 14(6): R58.

    [13] [13] WALLACE J G, BRADBURY P J, ZHANG N, et al. Association mapping across numerous traits reveals patterns of functional variation in maize[J]. PLoS Genetics, 2014, 10(12): e1004845.

    [14] [14] MAXIMILIAN O, PRESS R C, MCCOY A N, et al. Short tandem repeats with massive variation and functional conseqeuences across strains of Arabidopsis thaliana [J]. Genome Research, 2018, 28: 1169-1178.

    [15] [15] ZHAO H, YAO W, OUYANG Y, et al.?RiceVarMap: a comprehensive database of rice genomic variations[J]. Nucleic Acids Research, 2015, 43: 1018-1022.

    [16] [16] VALLIYODAN B, QIU D, PATIL G, et al. Landscape of genomic diversity and trait discovery in soybean [J]. Scientific Reports, 2016, 6: 23598.

    [17] [17] PASCHOLD A, LARSON N B, MARCON C, et al. Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids[J]. The Plant Cell, 2014, 26(10): 3939-3948.

    [18] [18] WEN Z X, TAN R J, YUAN J Z, et al. Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean[J]. BMC Genomics, 2014, 15: 809.

    [19] [19] CHIMUNGU J G, MALIRO M F A, NALIVATA P C, et al. Utility of root cortical aerenchyma under water limited conditions in tropical maize (Zea mays L.)[J]. Field Crops Research, 2015, 171(1): 86-98.

    [20] [20] CASSANI E, PUGLISI D, CANTALUPPI E, et al. Genetic studies regarding the control of seed pigmentation of an ancient European pointed maize (Zea mays L.) rich in phlobaphenes: the “Nero Spinoso” from the camonica valley[J]. Genetic Resources and Crop Evolution, 2016, 64: 761-773.

    [21] [21] LI H, DURBIN R. Fast and accurate short read alignment with Burrows-Wheeler transform[J]. Bioinformatics, 2009, 25(14): 1754-1760.

    [22] [22] LI H, HANDSAKER B, WYSOKER A, et al. The sequence alignment/map format and SAMtools[J]. Bioinformatics, 2009, 25(6): 2078-2079.

    [23] [23] ABYZOY A, URBAN A E, SNYDER M, et al. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing[J]. Genome Research, 2011, 21(6): 974-984.

    [24] [24] CHEN K, WALLIS J W, MCLELLAN M D, et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation[J]. Nature Methods, 2009, 6(9): 677-681.

    [28] [28] CHENG Z X, LIN J C, LIN T X, et al. Genome-wide analysis of radiation-induced mutations in rice (Oryza sativa L. ssp. indica) [J]. Molecular BioSystems, 2014, 10(4): 795-805.

    Tools

    Get Citation

    Copy Citation Text

    ZHANG Li, ZHANG Yong, ZHANG Yuanhai, ZHANG Yiyan, XIE Tao, PENG Xuanming, YANG Zhen. Genome-wide Analysis of Radiation-induced Mutations in Rice Mutant[J]. Acta Laser Biology Sinica, 2021, 30(1): 59

    Download Citation

    EndNote(RIS)BibTexPlain Text
    Save article for my favorites
    Paper Information

    Category:

    Received: Jul. 2, 2020

    Accepted: --

    Published Online: Aug. 23, 2021

    The Author Email:

    DOI:10.3969/j.issn.1007-7146.2021.01.008

    Topics