Chinese Journal of Lasers, Volume. 49, Issue 15, 1507402(2022)

Convenient Nucleic Acid Detection Method and Point-of-Care Detection Device Based on CRISPR/Cas12a Molecular Diagnosis

Fei Hu1,2,4,5, Yanfei Liu1,2,4,5, Xichen Li1,2,4,5, Minghang Cao1,2,4,5, Niancai Peng1,2,4,5、*, and Zhenxi Zhang3,4,5
Author Affiliations
  • 1State Key Laboratory of Mechanical Manufacturing System Engineering, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
  • 2School of Mechanical Engineering, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
  • 3School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, Shaanxi, China
  • 4Xi’an Key Laboratory of Biomedical Testing and High-End Equipment, Xi’an 710049, Shaanxi, China
  • 5Shaanxi Province Life Science Testing Instrument Engineering Technology Research Center, Xi’an 710049, Shaanxi, China
  • show less
    Figures & Tables(9)
    Flow chart of a convenient nucleic acid detection method based on CRISPR/Cas12a
    Schematics of instrument structure. (a) Physical map of experimental instrument; (b) schematic of overall structure of testing instrument; (c) schematic of optical cassette structure; (d) schematic of instrument base structure
    Optical inspection in minimalist mode. (a) Workflow chart of nucleic acid detection APP; (b) real-time fluorescent CRISPR reaction time; (c) positive result showed by nucleic acid detection APP; (d) negative result showed by nucleic acid detection APP
    Schematics of optical circuit. (a) Schematic of fluorescence recognition circuit for small portable device; (b) schematic of coaxial optical fiber detection principle
    Experimental detection limit in minimalist mode. (a) Results showed by nucleic acid detection APP; (b) fluorescence data analysis diagram
    Specific analysis (data represented as the mean ± standard deviation of three experimental replicates). (a) Specific analysis of different virus; (b) base mismatch specificity analysis
    Detection results comparison between our method and PCR method ( negative reaction time is replaced by 0 min)
    • Table 1. Sequence information of DNA oligonucleotides and crRNA

      View table

      Table 1. Sequence information of DNA oligonucleotides and crRNA

      NameSequence (5′-3′)
      Universal RPA forward primer (SARS-CoV-2)AGGCAGCAGTAGGGGAACTTCTCCTGCTAGAAT
      Universal RPA reverse primer (SARS-CoV-2)TTGGCCTTTACCAGACATTTTGCTCTCAAGCTG
      Universal PCR forward primer (SARS-CoV-2)TTACAAACATTGGCCGCAAA
      Universal PCR reverse primer (SARS-CoV-2)GCGCGACATTCCGAAGAA
      Universal PCR Probe (SARS-CoV-2)FAM-ACAATTTGCCCCCAGCGCTTCAG-BHQ
      (SARS-CoV-2) crRNAUAAUUUCUACUAAGUGUAGAUCUGCUGCUUGACAGAUUGAAC
    • Table 2. Sequence information of nucleic acid mismatch

      View table

      Table 2. Sequence information of nucleic acid mismatch

      NameSequence (5′-3′)
      SARS-CoV-2 sequenceCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATG
      GCTGGCAATGGCGGTGATGCTGCTCTTGCTTTGCTGCTGCTTGACAGAT
      TGAACCAGCTTGAGAGCAAAATGTCTGGTAAAGGCCAACA
      RNA1 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCAAGACAGAT TGAACCAG…GTAAAGGCCAACA
      RNA2 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTACAGAT TGAACCAG…GTAAAGGCCAACA
      RNA2 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTGACCGAT TGAACCAG…GTAAAGGCCAACA
      RNA3 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTGACTGT CTGAACCAG…GTAAAGGCCAACA
      RNA4 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTGACAGATAC TGAACCAG…GTAAAGGCCAACA
      RNA5 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTAACAGAT TGAACCAG
      RNA6 mismatchCAGGCAGCAGTAGG…CTTTGCTGCTGCTTGACTTGAT TGAACCAG…GTAAAGGCCAACA
    Tools

    Get Citation

    Copy Citation Text

    Fei Hu, Yanfei Liu, Xichen Li, Minghang Cao, Niancai Peng, Zhenxi Zhang. Convenient Nucleic Acid Detection Method and Point-of-Care Detection Device Based on CRISPR/Cas12a Molecular Diagnosis[J]. Chinese Journal of Lasers, 2022, 49(15): 1507402

    Download Citation

    EndNote(RIS)BibTexPlain Text
    Save article for my favorites
    Paper Information

    Category: Bio-Optical Sensing and Manipulation

    Received: Dec. 1, 2021

    Accepted: Mar. 3, 2022

    Published Online: Jul. 29, 2022

    The Author Email: Peng Niancai (ncpeng@mail.xjtu.edu.cn)

    DOI:10.3788/CJL202249.1507402

    Topics