[1] A. Badon et al. Multiple scattering limit in optical microscopy. Opt. Express, 25, 28914-28934(2017). https://doi.org/10.1364/OE.25.028914

[2] S. Yoon et al. Deep optical imaging within complex scattering media. Nat. Rev. Phys, 2, 141-158(2020). https://doi.org/10.1038/s42254-019-0143-2

[3] J. Bertolotti, O. Katz. Imaging in complex media. Nat. Phys., 18, 1008-1017(2022). https://doi.org/10.1038/s41567-022-01723-8

[4] P. Calzavara-Pinton et al. Reflectance confocal microscopy for in vivo skin imaging. Photochem. Photobiol., 84, 1421-1430(2008).

[5] F. Xia et al. In vivo label-free confocal imaging of the deep mouse brain with long-wavelength illumination. Biomed. Opt. Express, 9, 6545-6555(2018). https://doi.org/10.1364/BOE.9.006545

[6] A. F. Fercher et al. Optical coherence tomography—principles and applications. Rep. Prog. Phys., 66, 239(2003). https://doi.org/10.1088/0034-4885/66/2/204

[7] A. D. Aguirre, W. Drexler, J. G. Fujimoto et al. Optical coherence microscopy. Optical Coherence Tomography: Technology and Applications, 865-911(2015).

[8] Y. Zhao et al. Dual-axis optical coherence tomography for deep tissue imaging. Opt. Lett., 42, 2302-2305(2017). https://doi.org/10.1364/OL.42.002302

[9] M. Cua, B. Blochet, C. Yang. Speckle-resolved optical coherence tomography for mesoscopic imaging within scattering media. Biomed. Opt. Express, 13, 2068-2081(2022). https://doi.org/10.1364/BOE.448969

[10] L. V. Wang, S. Hu. Photoacoustic tomography: in vivo imaging from organelles to organs. Science, 335, 1458-1462(2012). https://doi.org/10.1126/science.1216210

[11] C. Lal, M. J. Leahy. An updated review of methods and advancements in microvascular blood flow imaging. Microcirculation, 23, 345-363(2016). https://doi.org/10.1111/micc.12284

[12] S. Gigan. Optical microscopy aims deep. Nat. Photonics, 11, 14-16(2017). https://doi.org/10.1038/nphoton.2016.257

[13] N. Ji, D. E. Milkie, E. Betzig. Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nat. Methods, 7, 141-147(2010). https://doi.org/10.1038/nmeth.1411

[14] K. M. Hampson et al. Adaptive optics for high-resolution imaging. Nat. Rev. Methods Primers, 1, 68(2021). https://doi.org/10.1038/s43586-021-00066-7

[15] J.-H. Park et al. Large-field-of-view imaging by multi-pupil adaptive optics. Nat. Methods, 14, 581-583(2017). https://doi.org/10.1038/nmeth.4290

[16] D. Débarre, M. J. Booth, T. Wilson. Image based adaptive optics through optimisation of low spatial frequencies. Opt. Express, 15, 8176-8190(2007).

[17] A. E. Tippie, A. Kumar, J. R. Fienup. High-resolution synthetic-aperture digital holography with digital phase and pupil correction. Opt. Express, 19, 12027-12038(2011). https://doi.org/10.1364/OE.19.012027

[18] D. Hillmann et al. Aberration-free volumetric high-speed imaging of in vivo retina. Sci. Rep., 6, 35209(2016). https://doi.org/10.1038/srep35209

[19] S. G. Adie et al. Computational adaptive optics for broadband optical interferometric tomography of biological tissue. Proc. Natl. Acad. Sci. U. S. A., 109, 7175-7180(2012). https://doi.org/10.1073/pnas.1121193109

[20] N. D. Shemonski et al. Computational high-resolution optical imaging of the living human retina. Nat. Photonics, 9, 440-443(2015). https://doi.org/10.1038/nphoton.2015.102

[21] S. Liu et al. Closed-loop wavefront sensing and correction in the mouse brain with computed optical coherence microscopy. Biomed. Opt. Express, 12, 4934-4954(2021). https://doi.org/10.1364/BOE.427979

[22] S. Kang et al. Imaging deep within a scattering medium using collective accumulation of single-scattered waves. Nat. Photonics, 9, 253-258(2015). https://doi.org/10.1038/nphoton.2015.24

[23] A. Badon et al. Smart optical coherence tomography for ultra-deep imaging through highly scattering media. Sci. Adv., 2, e1600370(2016). https://doi.org/10.1126/sciadv.1600370

[24] S. M. Popoff et al. Measuring the transmission matrix in optics: an approach to the study and control of light propagation in disordered media. Phys. Rev. Lett., 104, 100601(2010). https://doi.org/10.1103/PhysRevLett.104.100601

[25] M. Mounaix et al. Spatiotemporal coherent control of light through a multiple scattering medium with the multispectral transmission matrix. Phys. Rev. Lett., 116, 253901(2016). https://doi.org/10.1103/PhysRevLett.116.253901

[26] S. Kang et al. High-resolution adaptive optical imaging within thick scattering media using closed-loop accumulation of single scattering. Nat. Commun., 8, 2157(2017). https://doi.org/10.1038/s41467-017-02117-8

[27] M. Kim et al. Label-free neuroimaging in vivo using synchronous angular scanning microscopy with single-scattering accumulation algorithm. Nat. Commun., 10, 3152(2019). https://doi.org/10.1038/s41467-019-11040-z

[28] S. Yoon et al. Laser scanning reflection-matrix microscopy for aberration-free imaging through intact mouse skull. Nat. Commun., 11, 5721(2020). https://doi.org/10.1038/s41467-020-19550-x

[29] Y. Kwon et al. Computational conjugate adaptive optics microscopy for longitudinal through-skull imaging of cortical myelin. Nat. Commun., 14, 105(2023). https://doi.org/10.1038/s41467-022-35738-9

[30] B. Li et al. Efficient framework of solving time-gated reflection matrix for imaging through turbid medium. Opt. Express, 31, 15461-15473(2023). https://doi.org/10.1364/OE.488257

[31] A. Badon et al. Distortion matrix concept for deep optical imaging in scattering media. Sci. Adv., 6, eaay7170(2020). https://doi.org/10.1126/sciadv.aay7170

[32] U. Najar et al. Harnessing forward multiple scattering for optical imaging deep inside an opaque medium. Nat. Commun., 15, 7349(2024). https://doi.org/10.1038/s41467-024-51619-9

[33] P. Balondrade et al. Multi-spectral reflection matrix for ultrafast 3D label-free microscopy. Nat. Photonics, 18, 1097-1104(2024). https://doi.org/10.1038/s41566-024-01479-y

[34] F. Bureau et al. Three-dimensional ultrasound matrix imaging. Nat. Commun., 14, 6793(2023). https://doi.org/10.1038/s41467-023-42338-8

[35] Y.-R. Lee et al. Exploiting volumetric wave correlation for enhanced depth imaging in scattering medium. Nat. Commun., 14, 1878(2023). https://doi.org/10.1038/s41467-023-37467-z

[36] P. Ferraro et al. Extended focused image in microscopy by digital holography. Opt. Express, 13, 6738-6749(2005). https://doi.org/10.1364/OPEX.13.006738

[37] J. F. De Boer, R. Leitgeb, M. Wojtkowski. Twenty-five years of optical coherence tomography: the paradigm shift in sensitivity and speed provided by Fourier domain OCT. Biomed. Opt. Express, 8, 3248-3280(2017). https://doi.org/10.1364/BOE.8.003248

[38] N. Bender et al. Coherent enhancement of optical remission in diffusive media. Proc. Natl. Acad. Sci. U. S. A., 119, e2207089119(2022). https://doi.org/10.1073/pnas.2207089119

[39] A. H. Barnett, J. Magland, L. af Klinteberg. A parallel nonuniform fast Fourier transform library based on an “exponential of semicircle” kernel. SIAM J. Sci. Comput., 41, C479-C504(2019). https://doi.org/10.1137/18M120885X

[40] E. Wolf. Three-dimensional structure determination of semi-transparent objects from holographic data. Opt. Commun., 1, 153-156(1969). https://doi.org/10.1016/0030-4018(69)90052-2

[41] D. Jin et al. Tomographic phase microscopy: principles and applications in bioimaging. J. Opt. Soc. Am. B, 34, B64-B77(2017). https://doi.org/10.1364/JOSAB.34.000B64

[42] Y. Park, C. Depeursinge, G. Popescu. Quantitative phase imaging in biomedicine. Nat. Photonics, 12, 578-589(2018). https://doi.org/10.1038/s41566-018-0253-x

[43] M. Wojtkowski et al. Ultrahigh-resolution, high-speed, Fourier domain optical coherence tomography and methods for dispersion compensation. Opt. Express, 12, 2404-2422(2004). https://doi.org/10.1364/OPEX.12.002404

[44] S. Hell et al. Aberrations in confocal fluorescence microscopy induced by mismatches in refractive index. J. Microsc., 169, 391-405(1993). https://doi.org/10.1111/j.1365-2818.1993.tb03315.x

[45] R. A. Muller, A. Buffington. Real-time correction of atmospherically degraded telescope images through image sharpening. J. Opt. Soc. Am., 64, 1200-1210(1974). https://doi.org/10.1364/JOSA.64.001200

[46] T. Yeminy, O. Katz. Guidestar-free image-guided wavefront shaping. Sci. Adv., 7, eabf5364(2021). https://doi.org/10.1126/sciadv.abf5364

[47] R. Horstmeyer, H. Ruan, C. Yang. Guidestar-assisted wavefront-shaping methods for focusing light into biological tissue. Nat. Photonics, 9, 563-571(2015). https://doi.org/10.1038/nphoton.2015.140

[48] D. C. Liu, J. Nocedal. On the limited memory BFGS method for large scale optimization. Math. Prog., 45, 503-528(1989). https://doi.org/10.1007/BF01589116

[49] S. G. Johnson. The NLopt nonlinear-optimization package(2014). http://github.com/stevengj/nlopt

[50] B. Judkewitz et al. Translation correlations in anisotropically scattering media. Nat. Phys., 11, 684-689(2015). https://doi.org/10.1038/nphys3373

[51] G. Osnabrugge et al. Generalized optical memory effect. Optica, 4, 886-892(2017). https://doi.org/10.1364/OPTICA.4.000886

[52] O. Haim, J. Boger-Lombard, O. Katz. Image-guided computational holographic wavefront shaping. Nat. Photonics, 19, 44-53(2025). https://doi.org/10.1038/s41566-024-01544-6

[53] N. Verrier, M. Atlan. Off-axis digital hologram reconstruction: some practical considerations. Appl. Opt., 50, H136-H146(2011). https://doi.org/10.1364/AO.50.00H136

[54] W. Xiong, C. W. Hsu, H. Cao. Long-range spatio-temporal correlations in multimode fibers for pulse delivery. Nat. Commun., 10, 2973(2019). https://doi.org/10.1038/s41467-019-10916-4

[55] Q. Yang et al. Extended imaging depth of en-face optical coherence tomography based on fast measurement of a reflection matrix by wide-field heterodyne detection. Opt. Lett., 45, 828-831(2020). https://doi.org/10.1364/OL.382898

[56] J. Cao et al. Enhance the delivery of light energy ultra-deep into turbid medium by controlling multiple scattering photons to travel in open channels. Light. Sci. Appl., 11, 108(2022). https://doi.org/10.1038/s41377-022-00795-8

[57] D. Kobat et al. Deep tissue multiphoton microscopy using longer wavelength excitation. Opt. Express, 17, 13354-13364(2009). https://doi.org/10.1364/OE.17.013354

[58] F. Van Beijnum et al. Frequency bandwidth of light focused through turbid media. Opt. Lett., 36, 373-375(2011). https://doi.org/10.1364/OL.36.000373

[59] W. Krauze et al. 3D scattering microphantom sample to assess quantitative accuracy in tomographic phase microscopy techniques. Sci. Rep., 12, 19586(2022). https://doi.org/10.1038/s41598-022-24193-7

[60] H.-C. Lin, Z. Wang, C. W. Hsu. Fast multi-source nanophotonic simulations using augmented partial factorization. Nat. Comput. Sci, 2, 815-822(2022). https://doi.org/10.1038/s43588-022-00370-6

[61] Z. Wang, Y. Zhang, C. W. Hsu. Full-wave simulations of tomographic optical imaging through augmented partial factorization. IEEE Trans. Comput. Imaging, 10, 1775-1785(2024). https://doi.org/10.1109/TCI.2024.3499747

[62] S. L. Jacques. History of Monte Carlo modeling of light transport in tissues using mcml.c. J. Biomed. Opt., 27, 083002(2022). https://doi.org/10.1117/1.JBO.27.8.083002

[63] M. Xu. Electric field Monte Carlo simulation of polarized light propagation in turbid media. Opt. Express, 12, 6530-6539(2004). https://doi.org/10.1364/OPEX.12.006530

[64] Y. Wang et al. GPU accelerated electric field Monte Carlo simulation of light propagation in turbid media using a finite-size beam model. Opt. Express, 20, 16618-16630(2012). https://doi.org/10.1364/OE.20.016618

[65] J. Sawicki, N. Kastor, M. Xu. Electric field Monte Carlo simulation of coherent backscattering of polarized light by a turbid medium containing Mie scatterers. Opt. Express, 16, 5728-5738(2008). https://doi.org/10.1364/OE.16.005728

[66] A. J. Radosevich et al. Open source software for electric field Monte Carlo simulation of coherent backscattering in biological media containing birefringence. J. Biomed. Opt., 17, 115001(2012). https://doi.org/10.1117/1.JBO.17.11.115001

[67] M. Safadi et al. Coherent backscattering of entangled photon pairs. Nat. Phys., 19, 562-568(2023). https://doi.org/10.1038/s41567-022-01895-3

[68] Y. Liu et al. Focusing light inside dynamic scattering media with millisecond digital optical phase conjugation. Optica, 4, 280-288(2017). https://doi.org/10.1364/OPTICA.4.000280

[69] M. M. Qureshi et al. In vivo study of optical speckle decorrelation time across depths in the mouse brain. Biomed. Opt. Express, 8, 4855-4864(2017). https://doi.org/10.1364/BOE.8.004855

[70] L. Gao, R. T. Smith. Optical hyperspectral imaging in microscopy and spectroscopy—a review of data acquisition. J. Biophotonics, 8, 441-456(2015). https://doi.org/10.1002/jbio.201400051

[71] Y. Rivenson et al. PhaseStain: the digital staining of label-free quantitative phase microscopy images using deep learning. Light Sci. Appl., 8, 23(2019). https://doi.org/10.1038/s41377-019-0129-y

[72] X. Chen et al. Artificial confocal microscopy for deep label-free imaging. Nat. Photonics, 17, 250-258(2023). https://doi.org/10.1038/s41566-022-01140-6

[73] J. Scholler et al. Dynamic full-field optical coherence tomography: 3D live-imaging of retinal organoids. Light Sci. Appl., 9, 140(2020). https://doi.org/10.1038/s41377-020-00375-8

[74] Y. Jia et al. Split-spectrum amplitude-decorrelation angiography with optical coherence tomography. Opt. Express, 20, 4710-4725(2012). https://doi.org/10.1364/OE.20.004710

[75] T. Akkin et al. Detection of neural activity using phase-sensitive optical low-coherence reflectometry. Opt. Express, 12, 2377-2386(2004). https://doi.org/10.1364/OPEX.12.002377

[76] W. Kim et al. Picometer scale vibrometry in the human middle ear using a surgical microscope based optical coherence tomography and vibrometry system. Biomed. Opt. Express, 10, 4395-4410(2019). https://doi.org/10.1364/BOE.10.004395

[77] Y. Zhang et al. Datasets for deep imaging inside scattering media through virtual spatiotemporal wavefront shaping - hyperspectral reflection matrices(2024). https://doi.org/10.5281/zenodo.8231064

[78] Y. Zhang et al. Processing code for SMT experiment(2024). https://github.com/complexphoton/SMTexperiment

[79] H. Yu et al. Measuring large optical transmission matrices of disordered media. Phys. Rev. Lett., 111, 153902(2013). https://doi.org/10.1103/PhysRevLett.111.153902

[80] C. Wang et al. Reducing the influence of direct reflection on return signal detection in a 3D imaging lidar system by rotating the polarizing beam splitter. Appl. Opt., 55, 1559-1564(2016). https://doi.org/10.1364/AO.55.001559

[81] Phantom TMX 7510. https://www.phantomhighspeed.com/products/cameras/tmx/7510

[82] M. N. Polyanskiy. Refractive index of SCHOTT multiple purpose D263TECO. https://refractiveindex.info/?shelf=glassbook=SCHOTT-multipurposepage=D263TECO

[83] M. Daimon, A. Masumura. Measurement of the refractive index of distilled water from the near-infrared region to the ultraviolet region. Appl. Opt., 46, 3811-3820(2007). https://doi.org/10.1364/AO.46.003811

[84] V. Gupta et al. Mechanotunable surface lattice resonances in the visible optical range by soft lithography templates and directed self-assembly. ACS Appl. Mater. Interfaces, 11, 28189-28196(2019). https://doi.org/10.1021/acsami.9b08871

[85] M. N. Polyanskiy. Refractiveindex.info database of optical constants. Sci. Data, 11, 94(2024). https://doi.org/10.1038/s41597-023-02898-2

[86] P. Fricker. Zernike polynomials(2023). https://www.mathworks.com/matlabcentral/fileexchange/7687-zernike-polynomials

[87] C. W. Hsu et al. Broadband coherent enhancement of transmission and absorption in disordered media. Phys. Rev. Lett., 115, 223901(2015). https://doi.org/10.1103/PhysRevLett.115.223901

[88] F. A. South et al. Local wavefront mapping in tissue using computational adaptive optics OCT. Opt. Lett., 44, 1186-1189(2019). https://doi.org/10.1364/OL.44.001186

[89] A. Kumar, W. Drexler, R. A. Leitgeb. Subaperture correlation based digital adaptive optics for full field optical coherence tomography. Opt. Express, 21, 10850-10866(2013). https://doi.org/10.1364/OE.21.010850

[90] T. Theivasanthi, M. Alagar. Titanium dioxide (TiO2) nanoparticles XRD analyses: an insight(2013).

[91] S. Mohanty et al. Fabrication of scalable and structured tissue engineering scaffolds using water dissolvable sacrificial 3D printed moulds. Mater. Sci. Eng. C, 55, 569-578(2015). https://doi.org/10.1016/j.msec.2015.06.002

[92] C. Mätzler. MATLAB functions for Mie scattering and absorption(2002).

[93] J. R. DeVore. Refractive indices of rutile and sphalerite. J. Opt. Soc. Am., 41, 416-419(1951). https://doi.org/10.1364/JOSA.41.000416

[94] L. F. Rojas-Ochoa et al. Photonic properties of strongly correlated colloidal liquids. Phys. Rev. Lett., 93, 073903(2004). https://doi.org/10.1103/PhysRevLett.93.073903

[95] R. Carminati, J. C. Schotland. Principles of Scattering and Transport of Light(2021).

[96] M. Duelk, K. Hsu. SLEDs and Swept Source Laser Technology for OCT, 527-561(2015).

[97] J.-Y. Tinevez et al. Trackmate: an open and extensible platform for single-particle tracking. Methods, 115, 80-90(2017). https://doi.org/10.1016/j.ymeth.2016.09.016

[98] J. Schindelin et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods, 9, 676-682(2012). https://doi.org/10.1038/nmeth.2019

[99] S. Park et al. Label-free adaptive optics single-molecule localization microscopy for whole zebrafish. Nat. Commun., 14, 4185(2023). https://doi.org/10.1038/s41467-023-39896-2

[100] D. Ershov et al. Trackmate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines. Nat. Methods, 19, 829-832(2022). https://doi.org/10.1038/s41592-022-01507-1