Based on the fact that there are unnegligible stochastic effects in the compensation of gain for the loss in the soliton communication system, the influence is studied of stochastic gain on the soliton transmitting system. The results show that the stochastic gain leads to the arrival time jitters, the variation of which is proportional to the cube of the propagation distance, and reduces the capacity of the system. The influence can be suppressed well by filters.