Acta Photonica Sinica, Volume. 52, Issue 11, 1110004(2023)

High Fidelity Image Reconstruction of Optical Sectioning Structured Illumination Microscopy

Xianfeng XIE1,2, Jia QIAN1, Xing LI1, Shipei DANG1, Chen BAI1, Junwei MIN1, Dan DAN1,2、**, and Baoli YAO1,2、*
Author Affiliations
  • 1State Key Laboratory of Transient Optics and Photonics,Xi'an Institute of Optics and Precision Mechanics,Chinese Academy of Sciences,Xi'an 710119,China
  • 2University of Chinese Academy of Sciences,Beijing 100049,China
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    References(26)

    [1] BREUNINGER T, GREGER K, STELZER E H K. Lateral modulation boosts image quality in single plane illumination fluorescence microscopy[J]. Optics Letters, 32, 1938-1940(2007).

    [2] PLANCHON T A, GAO Liang, MILKIE D E et al. Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination[J]. Nature Methods, 8, 417-423(2011).

    [3] DAN Dan, YAO Baoli, LEI Ming. Structured illumination microscopy for super-resolution and optical sectioning[J]. Chinese Science Bulletin, 59, 1291-1307(2014).

    [4] HELMCHEN F, DENK W. Deep tissue two-photon microscopy[J]. Nature Methods, 2, 932-940(2005).

    [5] STACHELEK P, MACKENZIE L, PARKER D et al. Circularly polarised luminescence laser scanning confocal microscopy to study live cell chiral molecular interactions[J]. Nature Communications, 13, 553(2022).

    [6] KRZIC U, GUNTHER S, SAUNDERS T E et al. Multiview light-sheet microscope for rapid in toto imaging[J]. Nature Methods, 9, 730-733(2012).

    [7] VETTENBURG T, DALGARNO H I C, NYLK J et al. Light-sheet microscopy using an Airy beam[J]. Nature Methods, 11, 541-544(2014).

    [8] STELZER E H K, STROBL F, CHANG Bojui et al. Light sheet fluorescence microscopy[J]. Nature Reviews Methods Primers, 1, 73(2021).

    [9] MERTZ J. Optical sectioning microscopy with planar or structured illumination[J]. Nature Methods, 8, 811-819(2011).

    [10] QIAN Jia, LEI Ming, DAN Dan et al. Full-color structured illumination optical sectioning microscopy[J]. Scientific Reports, 5, 14513(2015).

    [11] LIN Ruizhe, KIPREOS E T, ZHU Jie et al. Subcellular three-dimensional imaging deep through multicellular thick samples by structured illumination microscopy and adaptive optics[J]. Nature Communications, 12, 3148(2021).

    [12] SUPEKAR O D, SIAS A, HANSEN S R et al. Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning[J]. Biomedical Optics Express, 13, 2530-2541(2022).

    [13] NEIL M A A, JUSKAITIS R, WILSON T. Method of obtaining optical sectioning by using structured light in a conventional microscope[J]. Optics Letters, 22, 1905-1907(1997).

    [14] DAN Dan, LEI Ming, YAO Baoli et al. DMD-based LED-illumination super-resolution and optical sectioning microscopy[J]. Scientific Reports, 3, 1116(2013).

    [15] PATORSKI K, TRUSIAK M, TKACZYK T. Optically-sectioned two-shot structured illumination microscopy with Hilbert-Huang processing[J]. Optics Express, 22, 9517-9527(2014).

    [16] ZHOU Xing, LEI Ming, DAN Dan et al. Double-exposure optical sectioning structured illumination microscopy based on Hilbert transform reconstruction[J]. PLoS One, 10, e0120892(2015).

    [17] DANG Shipei, QIAN Jia, PENG Tong et al. Background noise suppression of optical sectioning structured illumination microscopy via Fourier domain reconstruction[J]. Frontiers in Physics, 368(2022).

    [18] BEERAVOLU A R, AZAM S, JONKMAN M et al. Preprocessing of breast cancer images to create datasets for deep-CNN[J]. IEEE Access, 9, 33438-33463(2021).

    [19] STERNBERG S R. Biomedical image processing[J]. Computer, 16, 22-34(1983).

    [20] BECKER K, SAGHAFI S, PENDE M et al. Visualizing minute details in light‐sheet and confocal microscopy data by combining 3D rolling ball filtering and deconvolution[J]. Journal of Biophotonics, 15, e202100290(2022).

    [21] SEKKO E, THOMAS G, BOUKROUCHE A. A deconvolution technique using optimal Wiener filtering and regularization[J]. Signal Processing, 72, 23-32(1999).

    [22] FONTBONNE A, SAUER H, GOUDAIL F. Improved performance of a hybrid optical/digital imaging system with fast piecewise Wiener deconvolution[J]. Optics Express, 30, 34343-34361(2022).

    [23] CHAN T F, WONG C K. Total variation blind deconvolution[J]. IEEE Transactions on Image Processing, 7, 370-375(1998).

    [24] LEVIN A, WEISS Y, DURAND F et al. Understanding and evaluating blind deconvolution algorithms[C], 1964-1971(2009).

    [25] HOJJATOLESLAMI S A, AVANAKI M R N, PODOLEANU A G. Image quality improvement in optical coherence tomography using Lucy-Richardson deconvolution algorithm[J]. Applied Optics, 52, 5663-5670(2013).

    [26] TSABARY A, ABOOKASIS D. Improving reconstruction of targets hidden in scattering media by introducing the Lucy-Richardson deconvolution algorithm into a system of multiview optical projections[J]. Journal of Modern Optics, 69, 850-860(2022).

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    Xianfeng XIE, Jia QIAN, Xing LI, Shipei DANG, Chen BAI, Junwei MIN, Dan DAN, Baoli YAO. High Fidelity Image Reconstruction of Optical Sectioning Structured Illumination Microscopy[J]. Acta Photonica Sinica, 2023, 52(11): 1110004

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    Paper Information

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    Received: Apr. 27, 2023

    Accepted: Jun. 7, 2023

    Published Online: Dec. 22, 2023

    The Author Email: Dan DAN (dandan@opt.ac.cn), Baoli YAO (yaobl@opt.ac.cn)

    DOI:10.3788/gzxb20235211.1110004

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