Chinese Journal of Lasers, Volume. 51, Issue 9, 0907006(2024)

Research Progress on Epidemic Virus Detection Based on Surface‑Enhanced Raman Spectroscopy

Yi Liu, Nan Wang, Shaohua He, Jun Zhang, Shangyuan Feng, and Duo Lin*
Author Affiliations
  • Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Photonic and Electronic Engineering, Fujian Normal University, Fuzhou 350007, Fujian , China
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    Figures & Tables(15)
    Schematic diagram of virus detection based on SERS technology
    SERS sensors and platforms are designed in a variety of diverse ways for label-free detection of SARS-CoV-2. (a) Schematic diagram of the design and operation process of the COVID-19 SERS sensor[36]; (b) flexible substrate combined with SERS metal-insulator-metal nanostructures and machine learning-based label-free detection platform[42]; (c) schematic diagram of SnS2 microsphere substrates design[44]; (d) Raman enhancement mechanism of Cu2O nanoarray with significant enhancement factor[45]
    Machine learning techniques are applied to SARS-CoV-2 label-free detection. (a) Identification of pure S protein standard samples by SERS spectroscopy using PCA[47]; (b) SERS biosensors are engineered with 3D porous Ag nanoparticle-based microplasma-engineered nanoassemblies (denoted as AgMEN) deposited on cellulose paper (left) and functionalized with antibodies (AgMEN@Ab)(center part) to detect the corresponding antigens by analyzing the SERS response (right)[48]
    Application of SERS nanoprobes in label detection and differentiation of SARS-CoV-2. (a) Schematic of the SERS assay based on one-step aptamer recognition for rapid point-of-care detection of SARS-CoV-2 virus within 5 min[51]; (b) stepwise reactions of RBD probe for SARS-CoV-2 capture and detection with SERS nanotags, for virus and variant identification based on the average Raman spectrum results[54]
    Application of SERS label detection method for the detection of RNA and proteins from SARS-CoV-2 virus lysates.(a) Schematic illustrations of the preparation of SERS tags and the signal amplification strategy for SERS detection of SARS-CoV-2 RNA[55]; (b) preparation of Au@4MBN@Ag NPs and fabrication of two-dimensional SERS sensing chip for SARS-CoV-2 RNA detection[56]; (c) schematic illustration of the quantitative evaluation of SARS-CoV-2 using the SERS-based aptasensor[57]
    Multi-mode virus detection scheme incorporating SERS technology. (a) Schematic of the triple-mode biosensors for COVID-19 virus RNA detection[59]; (b) PCR amplification process for bridge DNAs and SERS detections for bridge DNAs[60]
    SERS labeling method applied to the detection of influenza A virus. (a) Schematic diagram of using SERS assisted with pre-filtering to sensitively detect influenza A virus [64]; (b)schematic of the IMBSIs@Ag-SERS method for H5N1 influenza virus detection[65]
    SERS labeling method applied to the detection and differentiation of multiple respiratory viruses. (a) Working principle of dual aptamer-immobilized Au nanopopcorn substrate for virus assays[69]; (b) collection of throat swab sample and operating procedure for the simultaneous quantitative detection of three respiratory viruses via the Fe3O4@Au-based SERS LFA strip[70]
    SERS technology applied to the detection of human immunodeficiency virus (HIV-1) and norovirus (NoV). (a) Schematic diagram demonstrating rapid handheld SERS platform for HIV detection[73]; (b) the stepwise dual-modality NoV detection[77]
    SERS technology applied to the detection of dengue virus (DENV). (a) Schematic of platform for DENV2 NS1 detection in a single infected mosquito sample with the integration of nanoyeast scFvs affinity probes and nanobox-based SERS nanotags[83]; (b) schematic illustration of SERS assay of DENV gene via a cascade enzyme-free signal amplification strategy of LCHA and HCR[84]
    SERS technology used for the detection of DNA viruses such as hepatitis B virus(HBV) and monkeypox virus(MPXV).(a) Schematic illustration showing the integration of a microfluidic device with the SERS-active substrate based on Au-Ag coated GaN surface[92]; (b) schematic diagram of CRISPR/Cas12a-SERS principle analysis[93]; (c) the principle of MPXV detection by colorimetric-SERS dual-mode ICA[97]
    CRISPR/Cas-SERS platform applied to the detection of viral genetic material. (a) Schematic diagram of the gene detection by using the CRISPR/dCas9-based SERS method, assisted with HRP-Catalyzed signal amplification[111]; (b) schematic diagram of the proposed CRISPR/Cas12a-SERS platform for amplification-free ASFV dsDNA detection[112]
    Portable Raman spectrometer devices applied to SERS virus detection schemes. (a) Schematic illustration of SERS based immunoassay platform(with a portable Raman spectrometer)[115]; (b) schematic diagram of the detection of influenza A virus H1N1 by SERS and gold electrodeposition nanostructure[116]; (c) schematic diagram of a SERS detection method based on one-step aptamer identification using a portable Raman spectrometer for rapid and point-of-care detection of SARS-CoV-2 virus in less than 5 minutes[51]
    • Table 1. Comparison table of RNA viral detection protocols

      View table

      Table 1. Comparison table of RNA viral detection protocols

      Label

      method

      Type of virus

      Virus

      species

      SERS

      platform

      Target

      Dynamic

      range

      Methods

      used

      Sample

      solution

      TimeLoDReference
      Label freeRNA virusSARS-CoV-2gold-nanoneedles arrayS-protein

      PCA &

      DA

      saliva urines5 min80 copies/mL36
      Label freeRNA virusSARS-CoV-2SERS-active surfacesS-proteinPBS<1 pg/mL39
      Label freeRNA virusSARS-CoV-2Au nanoplate film/MgF2/Au mirror/glassS-protein1.25×10-6‒4.7×10-3 g/mL

      VTM,

      PCA

      PLS-DA

      saliva

      2.8×

      10-11 g/mL

      40
      Label freeRNA virus

      SARS-CoV-2

      Omicron

      Ag platformssRNAPBS41
      Label freeRNA virus

      SARS-CoV-2

      influenza A H1N1

      metal-insulator-metal nanostructures

      S protein

      HA protein

      PCA

      random

      forest algorithm

      saliva25 min103 copies/mL42
      Label freeRNA virusSARS-CoV-2GAgNPs paper sensorS-proteinsaliva2 min2.4 pg/µL43
      Label freeRNA virusSARS-CoV-2spherical SnS2 structure

      S protein

      RNA

      10‒

      1010 copies/mL

      PCA

      saliva,

      stool, urine, blood, items

      5 min80 copies/mL44
      Label freeRNA virusSARS-CoV-2Cu2O nanoarrayRNA

      100‒

      106 copies/mL

      respiratory swab RNA extracts5 min80 copies/mL45
      Label freeRNA virus

      SARS-CoV-2

      Beta,Delta,Wuhan, Omicron

      Ag INPsS proteinPCA, logistic regression algorithm

      saliva

      nasal swab

      15 min47
      Label freeRNA virus

      SARS-CoV-1

      SARS-CoV-2

      Au nano-pyramidssingle-particle

      LDA, HCA

      Modle training

      saliva5 h46
      Label freeRNA virus

      SARS-CoV-2

      wild-type, Alpha, Delta, Omicron

      3D porous AgMEN

      S protein

      N protein

      1.0 fg/mL‒

      1 mg/mL

      1.0 pg/mL‒

      1 mg/mL

      1.0 pg/mL‒

      1 mg/mL

      saliva

      1.0 fg/mL

      1000 fg/mL

      100 fg/mL

      48
      Label freeRNA virus

      MERS-CoV

      SARS-CoV

      SARS-CoV-2

      HCoVHKU1

      HCoV-OC43

      Ag-coated Si substratesS-proteinMLPPBS49
      4-MBARNA virusSARS-CoV-2Ag-LFAN-protein

      10‒

      1000 ng/mL

      saliva15 min0.03 ng/mL50
      Nile BlueARNA virusSARS-CoV-2

      Magnetic

      beads

      viral particles

      250‒

      10000 TU/μL

      PBS, swab samples5 min124 TU/μL51
      GNPsRNA virusSARS-CoV-2magnetic nanoparticlesS-protein4.1×104 genomes/mLsaliva30 min257 fg/mL52
      4-MBARNA virusSARS-CoV-2Au NPsS-protein

      1 fg/mL‒

      1ng/mL

      10 fg/mL ‒

      10 ng/mL

      PBS

      saliva serum blood

      0.77 fg/mL

      6.07 fg/mL

      7.60 fg/mL

      0.10 pg/mL

      53

      MMC

      DTNB

      TFMBA

      MBA

      RNA virus

      SARS-CoV-2

      Delta,Omicron

      Au-Ag nanobox-based SERS barcodes

      S protein

      N protein

      nasal swab20 virus/μL or 50 pg/mL54
      DTNBRNA virusSARS-CoV-2Ag NRsRNA

      102

      106 copies/mL

      PBS50 min51.38 copies/mL55
      4-MBNRNA virusSARS-CoV-2Au@4MBN@Ag NPsRNA10-6‒10-12MPBS10 min

      7.61×

      10-14 mol

      56
      4-MBARNA virusSARS-CoVM-2Au nanopopcornS-protein

      0‒

      1000 PFU/mL

      PBS15 min10 PFU/mL57
      DTNBRNA virusSARS-CoV-2AuNP-rGO-SWN-protein

      1 fmol‒

      100 amol

      PBS1 fmol58
      Label freeRNA virusSARS-CoV-2Au NPsRNA

      160 fmol‒

      1 nmol

      Colorimetric

      fluorescenc

      PBS40 min395 fmol59
      MGITCRNA virusSARS-CoV-2Au NDsRdRp genesSERS-PCRPBS60
      Label freeRNA virus

      Influenza A

      Influenza B

      Ag NPsviral particlesSVMPBS0.05 µg/mL61
      Label freeRNA virusInfluenza AAg NPsviral particles

      2×105‒2×

      106 VP/mL

      PBS15 min

      105 VP/mL

      62
      Label freeRNA virusInfluenza AAg NPsviral particles

      103‒5×1010 virus

      Particles/mL

      PBS103 particles/mL64
      Label freeRNA virusInfluenza A H5N1IMBSIs@Agviral particlesPBS5.0×106 TCID50/mL65
      Cy3RNA virusInfluenza AAg NPsviral particlesPBS

      10 VP/mL or

      2 VP/mL per probe

      66
      MGITCRNA virus

      Influenza A

      SARS-CoV-2

      Au NPsN-protein

      0‒

      8064 HAU/mL

      50‒

      1000 PFU/mL

      nasopharyngeal samples

      23 HAU/mL

      5.2 PFU/mL

      67
      Label freeRNA virus

      Influenza A

      SARS-CoV-2

      hCoV-229E

      Gold particlesviral particlesAI,RVM,PCAPBS68

      Cy3

      RRX

      4-MBA

      RNA virus

      SARS-CoV-2

      Influenza A

      Au nanopopcorn substrate

      S-Protein

      hemagglutinin

      0.32‒

      200 PFU/ml

      0.13‒

      80.6 HAU/mL

      PBS15 min

      0.62 HAU/mL

      0.78 PFU/mL

      69
      DTNBRNA virus

      influenzaA

      SARS-CoV-2

      RSV

      Fe3O4@Au core–shell MNPsviral antigenthroat swab samples15 min

      85 copies/mL

      8 pg/mL

      8 pg/mL

      70
      4-ATPRNA virus

      influenza A

      influenza B

      SARS-CoV-2

      Au4-ATP@Ag NPsN-proteinPhotothermal effectpharyngeal swab samples<20 min

      31.25 pg/mL 93.75 pg/m:

      31.25 pg/mL

      71
      Label freeRNA virusHIVAu NCsHIV-1 DNAMillipore water72
      Label freeRNA virusHIV(A,B,C,D, CRF02_AG)Ag nanorodsviral particles

      102

      106 copies/mL

      PCAplasma73
      Label freeRNA virusHIV(A,B,C,D)Au sputtered Ag nanorodsviral particlesPCAplasma74
      MoO3-QDsRNA virusHEV,NoVnanogels (NGs)viral particles

      102

      108 copies/mL

      PBS

      6.5 fg/mL

      8.2 fg/mL

      76
      S-agCDsRNA virusNoVPoly(DOP)-MNPs-Ag NCsviral particles

      1 fg/mL‒

      1 ng/mL

      FL-SERPBS5 min10 RNA copies /mL77
      Label freeRNA virusHCVAg NPsviral particlesPLSR, RMSECV, R2serum79
      Label freeRNA virusHCVAg NPsRNAPLSR, PCAserum80
      Label freeRNA virusDENV-2NANOBOXDENV2-NS1PBS83
      Label freeRNA virusDENVAg NRs arrayRNA1 fmol‒10 nmolserum0.49 fmol84
      Label freeRNA virusDENVAu NPsRNAserum1 pg/μL85
      Label freeRNA virusZika virusAg NIsZika antigen5‒1000 ng/mLPBS0.11 ng/mL86
      Label freeRNA virusWNVAu@Ag NPs

      WNV-NS1

      inactivated WNV virions

      PBS

      0.1 ng/mL

      0.2×102 copies/μL

      88
      Label freeRNA virus

      EMCV

      influenza A

      triangular Au nano-cavities arrayvirus particlesPBS

      106 PFU/ mL

      104 PFU/ mL

      106
      4-MBARNA virusSARS-CoV-2DVD

      VLP protein

      S-Protein

      100 pg/mL‒1000 ng/mL

      PBS

      saliva

      20 min

      50 pg/mL

      400 pg/mL

      115
      4-ATPRNA virusSARS-CoV-2Au NPs

      virus particle

      S-Protein

      PBS5 min

      18 Vp/mL

      4 pg/mL

      117
      4-ATPRNA virusSARS-CoV-2

      SERS-CRISPR/

      Cas12a

      SARS-CoV-2 N genenasopharyngeal swab samples40 min1 fmol113
      4-MBARNA virusSARS-CoV-2CRISPR/Cas12a-OVER-SARS-CoV-2SARS-CoV-2 genenasopharyngeal swab samples45 min1.9 copies/mL109
      Cy3RNA virus

      SARS-CoV-2

      influenza A

      RSV

      Si substratesantigensNasal swabs17 min95
      Label free

      RNA virus

      DNA virus

      SARS-CoV-2

      influenza A

      clustered silver nanoparticlesvirus particleLDA

      PBS

      saliva

      10 PFU/test51
    • Table 2. Comparison table of DNA viral detection protocols

      View table

      Table 2. Comparison table of DNA viral detection protocols

      Label methodType of virus

      Virus

      species

      SERS

      platform

      Target

      Dynamic

      range

      Methods used

      Sample

      solution

      TimeLoDReference
      FCDNA virusHBVGaN/Au-Ag SERS substrateHBsAg

      0.0125‒

      60 IU/ml

      plasma0.01 IU/mL92
      4-ATPDNA virusHBVAu NPs@4-ATPHBV DNA

      1 pmol‒

      1 nmol

      PCAserum50 min0.67 pM93
      Label freeDNA virusHBVAg NPsHBV DNAPCA, PLS-DABlood94
      Label freeDNA virusMPXVAg@citM1R proteinsPCAserum100 copies/mL96
      DTNBDNA virusMPXVMoS2@Au-AuMPXV antigens

      100‒

      0.01 ng/mL

      colorimetrythroat swab specimens<20 min0.002 ng/mL97
      Label freeDNA virusEBVRBV InfectionPCA, Mann-Whitney U test, IPA, IPKBGlial Cells100

      R6G

      TMB

      DNA virusEBVPS/Au NPsEBV IgG

      10-1

      105 pg/mL

      blood10 min0.045 pg/mL101
      Label freeDNA virusHSV-1,EBVnanoparticlesantigensPCA

      cell

      confluence

      103
      Label freeDNA virusAdenovirustriangular Au nano-cavities arrayvirus particlesPBS106 PFU/mL106
      Cy3DNA virusAdenovirusSi substratesantigensNasal swabs17 min95
      Label freeDNA virusAdenovirus 7clustered silver nanoparticlesvirus particleLDAPBS, saliva10 PFU/test51
      MBNDNA virusHPVCRISPR/Cas-SERS platform

      HPV16/

      18 dsDNA

      6.72×10-12 mol‒6.72×10-7 molserum40 min110
      TMBDNA virusHPV

      CRISPR/dCas9-SERS

      AuNC@SiO2

      HPV 16 pseudovirus genes30 ng‒190 ngH2O111
      4-MBADNA virusASFVCRISPR/Cas12a-SERS platformASFV dsDNA100 nmol‒10 fmolserum2 h10 fmol112
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    Yi Liu, Nan Wang, Shaohua He, Jun Zhang, Shangyuan Feng, Duo Lin. Research Progress on Epidemic Virus Detection Based on Surface‑Enhanced Raman Spectroscopy[J]. Chinese Journal of Lasers, 2024, 51(9): 0907006

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    Paper Information

    Category: biomedical photonics and laser medicine

    Received: Dec. 29, 2023

    Accepted: Feb. 19, 2024

    Published Online: Apr. 26, 2024

    The Author Email: Lin Duo (duo@fjnu.edu.cn)

    DOI:10.3788/CJL231604

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