Chinese Physics B, Volume. 29, Issue 10, (2020)

Quantitative modeling of bacterial quorum sensing dynamics in time and space

Xiang Li1,2, Hong Qi3, Xiao-Cui Zhang1, Fei Xu1, Zhi-Yong Yin1, Shi-Yang Huang4, Zhao-Shou Wang4、†, and Jian-Wei Shuai1,2,5
Author Affiliations
  • 1Department of Physics, College of Physical Science and Technology, Xiamen University, Xiamen 36005, China
  • 2State Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, Xiamen University, Xiamen 36110, China
  • 3Complex Systems Research Center, Shanxi University, Taiyuan 00006, China
  • 4Institute of Biochemical Engineering, Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
  • 5National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen 361102, China
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    Quorum sensing (QS) refers to the cell communication through signaling molecules that regulate many important biological functions of bacteria by monitoring their population density. Although a wide spectrum of studies on the QS system mechanisms have been carried out in experiments, mathematical modeling to explore the QS system has become a powerful approach as well. In this paper, we review the research progress of network modeling in bacterial QS to capture the system’s underlying mechanisms. There are four types of QS system models for bacteria: the Gram-negative QS system model, the Gram-positive QS system model, the model for both Gram-negative and Gram-positive QS system, and the synthetic QS system model. These QS system models are mostly described by the ordinary differential equations (ODE) or partial differential equations (PDE) to study the changes of signaling molecule dynamics in time and space and the cell population density variations. Besides the deterministic simulations, the stochastic modeling approaches have also been introduced to discuss the noise effects on kinetics in QS systems. Taken together, these current modeling efforts advance our understanding of the QS system by providing systematic and quantitative dynamics description, which can hardly be obtained in experiments.

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    Xiang Li, Hong Qi, Xiao-Cui Zhang, Fei Xu, Zhi-Yong Yin, Shi-Yang Huang, Zhao-Shou Wang, Jian-Wei Shuai. Quantitative modeling of bacterial quorum sensing dynamics in time and space[J]. Chinese Physics B, 2020, 29(10):

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    Paper Information

    Category: Modeling and simulations for the structures and functions of proteins and nucleic acids

    Received: Jun. 20, 2020

    Accepted: --

    Published Online: Apr. 21, 2021

    The Author Email: Wang Zhao-Shou (jianweishuai@xmu.edu.cn)

    DOI:10.1088/1674-1056/abb225

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