Journal of Radiation Research and Radiation Processing, Volume. 42, Issue 1, 010301(2024)

Genetic evolution of 16S rRNA in Escherichia coli induced by low-energy N+ implantation

Chao TANG1, Ting WANG2, Xuerui WANG1, Minghui CHEN3, and Changlong CAI1、*
Author Affiliations
  • 1School of Optoelectronic Engineering, Xi'an University of Technology, Xi'an 710021, China
  • 2College of Food and Biological Engineering, Shaanxi University of Science & Technology, Xi'an 710021, China
  • 3China Northern Vehicle Research Institute, Beijing 100072, China
  • show less
    References(24)

    [1] Qi ZHANG, Baozhen LI, Xuemei ZHENG et al. Research hotspots of multidrug-resistant organisms in China from 2000 to 2020: a visualization analysis. Chinese General Practice, 25, 2960-2964(2022).

    [2] Ruifang ZHAO, Hai WANG, Tianjiao JI et al. A biodegradable nano-polypeptide polymer with high efficiency and broad-spectrum antibacterial activity. Chinese Science Bulletin, 60, 1328(2015).

    [3] Changlong CAI, LYU Jie, Peihong MAO et al. DOB 16S rRNA gene mutation and evolution driven by low-energy nitrogen ion beam implantation. Journal of Xi’an Technological University, 37, 781-786(2017).

    [4] Minrui LIU, Pengwu LIN, Xing'e Qi et al. Phylogenetic and diversity analysis of Acidithiobacillus spp. based on 16S rRNA and RubisCO genes homologues. Acta Microbiologica Sinica, 56, 664-679(2016).

    [5] K Lagesen, P Hallin, E A Rødland et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research, 35, 3100-3108(2007).

    [7] T V Rozhko, O A Guseynov, V E Guseynova et al. Is bacterial luminescence response to low-dose radiation associated with mutagenicity?. Journal of Environmental Radioactivity, 177, 261-265(2017).

    [8] Shanshan BAO, Peihong MAO. Study on 16S rRNA gene of desert oligotrophic bacteria recombined by ion beam based on de novo sequencing. Genomics and Applied Biology, 36, 277-280(2017).

    [9] R T Lepcha, A Poddar, P Schumann et al. Comparative 16S rRNA signatures and multilocus sequence analysis for the genus Salinicola and description of Salinicola acroporae sp. nov, isolated from coral Acropora digitifera. Antonie Van Leeuwenhoek, 108, 59-73(2015).

    [10] A Prjibelski, D Antipov, D Meleshko et al. Using SPAdes de novo assembler. Current Protocols in Bioinformatics, 70, e102(2020).

    [11] J D Thompson, T J Gibson, D G Higgins. Multiple sequence alignment using ClustalW and ClustalX. Current Protocols in Bioinformatics, 2, 2-3(2003).

    [12] R C Edgar. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113(2004).

    [13] J P Huelsenbeck, F Ronquist. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755(2001).

    [14] J P Clewley, C Arnold. MEGALIGN. The multiple alignment module of LASERGENE. Methods in Molecular Biology, 70, 119-129(1997).

    [15] A R Gruber, S H Bernhart, R Lorenz. The ViennaRNA web services. Methods in Molecular Biology, 1269, 307-326(2015).

    [16] R Lorenz, I L Hofacker, P F Stadler. RNA folding with hard and soft constraints. Algorithms for Molecular Biology: AMB, 11, 8(2016).

    [17] C Pal, J Bengtsson-Palme, C Rensing et al. BacMet: antibacterial biocide and metal resistance genes database. Nucleic Acids Research, 42, D737-D743(2014).

    [18] X L Yin, X T Jiang, B L Chai et al. ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes. Bioinformatics, 34, 2263-2270(2018).

    [19] P Melvin, Weinstein, J K Thoms, S L James et al. Performance standards for antimicrobial susceptibility testing(2020).

    [20] Zengliang YU. Introduction to ion beam biotechnology, 129-140(2006).

    [21] L M Bobay, H Ochman. Impact of recombination on the base composition of bacteria and Archaea. Molecular Biology and Evolution, 34, 2627-2636(2017).

    [22] Yanfen LI. Experimental study on drug resistance of Staphylococcus aureus induced by linezolid in vitro, 18-23(2013).

    [23] E Mnich, J Ibran, M Chmiela. Treatment of helicobacter pylori infections in the light of the increase of antibiotic resistance. Postępy Higieny i Medycyny Doświadczalnej, 72, 143-158(2018).

    [24] Xueqin WEN, Fangcao WU, Fang LIU et al. Relationship between Helicobacter pylori resistance to tetracycline and 16S rDNA mutation. Journal of Pathogen Biology, 14, 433-438(2019).

    Tools

    Get Citation

    Copy Citation Text

    Chao TANG, Ting WANG, Xuerui WANG, Minghui CHEN, Changlong CAI. Genetic evolution of 16S rRNA in Escherichia coli induced by low-energy N+ implantation[J]. Journal of Radiation Research and Radiation Processing, 2024, 42(1): 010301

    Download Citation

    EndNote(RIS)BibTexPlain Text
    Save article for my favorites
    Paper Information

    Category: Research Articles

    Received: Oct. 4, 2023

    Accepted: Nov. 14, 2023

    Published Online: Mar. 27, 2024

    The Author Email: CAI Changlong (蔡长龙)

    DOI:10.11889/j.1000-3436.2023-0084

    Topics