With the rapid development of flexible wearable electronics, the demand for stretchable energy storage devices has surged. In this work, a novel gradient-layered architecture was design based on single-pore hollow lignin nanospheres (HLNPs)-intercalated two-dimensional transition metal carbide (Ti3C2Tx MXene) for fabricating highly stretchable and durable supercapacitors. By depositing and inserting HLNPs in the MXene layers with a bottom-up decreasing gradient, a multilayered porous MXene structure with smooth ion channels was constructed by reducing the overstacking of MXene lamella. Moreover, the micro-chamber architecture of thin-walled lignin nanospheres effectively extended the contact area between lignin and MXene to improve ion and electron accessibility, thus better utilizing the pseudocapacitive property of lignin. All these strategies effectively enhanced the capacitive performance of the electrodes. In addition, HLNPs, which acted as a protective phase for MXene layer, enhanced mechanical properties of the wrinkled stretchable electrodes by releasing stress through slip and deformation during the stretch-release cycling and greatly improved the structural integrity and capacitive stability of the electrodes. Flexible electrodes and symmetric flexible all-solid-state supercapacitors capable of enduring 600% uniaxial tensile strain were developed with high specific capacitances of 1273 mF cm-2 (241 F g-1) and 514 mF cm-2 (95 F g-1), respectively. Moreover, their capacitances were well preserved after 1000 times of 600% stretch-release cycling. This study showcased new possibilities of incorporating biobased lignin nanospheres in energy storage devices to fabricate stretchable devices leveraging synergies among various two-dimensional nanomaterials.