Single-molecule devices have garnered much attention in recent years for their potential applications in the next generation of electronic devices.[
Chinese Physics B, Volume. 29, Issue 10, (2020)
Covalent coupling of DNA bases with graphene nanoribbon electrodes: Negative differential resistance, rectifying, and thermoelectric performance
By applying nonequilibrium Green’s functions in combination with the density-functional theory, we investigate the electronic, thermal, and thermoelectric properties of four kinds of bases in DNA perpendicularly coupling between two ZGNR electrodes. The results show that the electron transport is highly sensitive to different base-ZGNR coupling geometries, and the system can present large rectifying and negative differential resistance effects. Moreover, the fluctuations of electronic transmission and super-low thermal conductance result in significant enhancement of the thermoelectric figure of merit (ZT): the ZT will be over 1.4 at room temperature, and over 1.6 at 200 K. The results show that the base-ZGNR coupling devices can present large rectifying, negative differential resistance, and enhanced thermoelectric effects.
1. Introduction
Single-molecule devices have garnered much attention in recent years for their potential applications in the next generation of electronic devices.[
Covalent linking of bases to GNRs could open the opportunity to create organic single-molecule devices with extraordinary transport properties. In the present work, we investigate the electron transport properties of GNRs with different bases. On the basis of first-principles calculations, we find very interesting transport properties in these base-molecule devices. More interestingly, large RE and NDR behaviors are also observed. Moreover, the ZT can be improved obviously, and the ZTmax will be over 1.4 at room temperature, and over 1.6 at 200 K. These results are constructive for the practical applications of molecular devices.
2. Method and model
It is known that DNA is a double spiral structure with π–π stacking between neighboring bases. The real direction of charge transfer is vertical to the surface of the DNA bases. Inspired by this structure, the bases are designed to couple perpendicularly with N-ZGNR in this paper.
The molecular devices we studied are illustrated in Fig. 1, which display three coupling configurations, namely N-AGNR-I-(a), N-AGNR-I-(b), and N-AGNR-I-(c) (N is the number of carbon dimer lines across the ribbon width, and I represents the types of bases). Here, the bottom-row figures are the top view, the middle-row figures are side view, the top-row figures are the structures of A, C, G, T bases, and the atoms with red circle markers are the atoms bonded with the electrodes. The three coupling configurations are divided into three regions: left and right N-ZGNR electrodes, and central scattering region. The geometrical optimization of the model structures and the transport properties are all performed by using the ATOMISTIXTOOLKIT (ATK) package. ATK is a powerful set of modeling tools for investigating a variety of nanoscale systems such as molecules, bulk and two-probe systems. The systems may contain nanowires, nanotubes, graphene, high-k dielectric interfaces, semiconductors, metals, etc., and the calculations are based on the following techniques: density-functional theory (DFT), extended Hückel theory, classical potentials, and non-equilibrium Green’s functions (NEGF). The overview of the work flow is: Building Atomistic Structures, Script Generator, Job Manager, Analyzing the Results. The specific calculation see the official website for specific operation methods and steps. (https://docs.quantumwise.com/index.html) For carbon materials, using single-plus polarization basis and 150 Ry (1 Ry = 13.6056923(12) eV) of cutoff energy is enough to ensure the accuracy of calculation.[
Figure 1.Schematic diagram of three kinds of base-ZGNR coupling devices (the bases are all sandwiched perpendicularly between two infinite
3. Results and discussion
Figure 2 investigates the current values of N-ZGNR-I-(j) (j = a, b, or c) as a function of applied bias. Moreover, the current-voltage characteristics of the pristine 4-ZGNR, 5-ZGNR are also presented for comparison. It is interesting to find that different base devices exhibit different transport characteristics, although they have the same left and right electrodes. Clearly in Fig. 2(a), 4-ZGNR-I-(a) (I = A, G, and T) significantly improves the current value when the bias voltage is higher than certain threshold voltage, and the current value is even almost 3 times larger than the pristine 4-ZGNR at bias voltage 0.9 V in 4-ZGNR-A-(a). However, the current value of 4-ZGNR-C-(a) is far lower than that of the corresponding pristine 4-ZGNR. Moreover, another impressive characteristic is that the current values in 4-ZGNR-A-(a) and 4-ZGNR-A-(c) present obvious unsymmetry under opposite biases. Especially, the current values in 4-ZGNR-A-(c) are larger than those in pristine 4-ZGNR under negative biases while the current values in 4-ZGNR-A-(c) are much lower than those in pristine 4-ZGNR under positive biases. Relative to large differences of current–voltage characteristics in different base coupling systems with 4-ZGNR, the current values in 5-ZGNR-I-(j) are all much lower than those in pristine 5-ZGNR. These results indicate that the phenomenon of current–voltage characteristics in base-ZGNR coupling systems depends on the width of ZGNRs.
Figure 2.Descriptions of the currents as a function of the applied bias of
Furthermore, another two interesting effects ca also be observed from these I–V curves: (i) Rectifying effect. The rectification ratio is defined as RR = I(−V)/I(V), where I(−V) and I(V) correspond to the currents under negative and positive biases with the same voltage magnitude. From the inserts in Fig. 2, we can see clearly that the rectification effects in 4-ZGNR-A-(a) and 4-ZGNR-C-(a) are most obvious, and the largest rectification ratios reach 180 at 0.04 V in 4-ZGNR-A-(a) and 254 at 1.49 V in 4-ZGNR-C-(a). In addition, the rectifying behavior is also observed in other base devices. These behaviors mean that our base-ZGNR coupling systems can function as a good electronic rectifier. (ii) NDR effect. Clearly, NDR behavior can be observed in 4-ZGNR-I-(a) (I = A, G, and T) and 4-ZGNR-I-(c) (I = A and C). It is known that the NDR effect has very important application value in future electronic circuity, including fast switches, amplifiers, and memories.[
To understand the electron transport properties in different base devices, in Fig. 3, we calculate their transport spectra under different bias voltages. For brevity, only bias voltage 0.6 V, 1.0 V, and 1.4 V are considered here. For the symmetric pristine 4-ZGNR, a transmission gap is formed near the Fermi level due to π and π* subbands have opposite σ parity and they cannot couple with each other to contribute to the transmission.[
Figure 3.Panels (a)–(c) [(d)–(f)] describe the electron transmission spectra of 4-ZGNR-
In order to understand the low transmission coefficients of 4-AGNR-I-(b)s, the LDOSs of 4-ZGNR-A-(b) and 4-ZGNR-C-(b) are presented in the insets of panels (d) and (e). Clearly, the LDOSs in 4-ZGNR-C-(b) and 4-ZGNR-A-(b) are distributed unsymmetrically highly compared with that in 4-ZGNR-A-(a), the weak wave functions overlap hinders carrier injection from the left electrode to the base and finally to the right electrode. This phenomenon indicates very low transmission coefficients in 4-ZGNR-I-(b)s. Increasing the bias, enlarging the range of transport spectra in the bias window, and forming greater current values in all 4-ZGNR-I-(b)s. Another interesting discovery is the significantly rectifying characteristic, which further broadens electronic applications of base-ZGNR coupling devices in a new generation of electronic circuity. In the present work, although large rectifying effect occurs at some biases in Figs. 2(a) and 2(d), the current values at these biases are → 0. So, the applications of theses devices are restricted. Especially, in strong contrast to low current values in 4-ZGNR-I-(c) (I = C, G, and T), the current in 4-ZGNR-A-(c) is comparable with that in pristine 4-ZGNR and a big rectifying effect can also be observed in this structure (the RR = 4.92 at 0.45 eV, and RR = 5.4 at 0.82 eV). To understand these interesting effects, we describe electron transmission spectra for 4-ZGNR-A-(c) at 0.2 V, 0.4 V, and 0.8 V biases in Figs. 4(a)–4(c). As a comparison, in Figs. 4(e)–4(g), we describe electron transmission spectra for the same structure at opposite biases. Clearly from Figs. 4(a) and 4(d), the transmission coefficients in 4-ZGNR-A-(c) at 0.2 V are much lower than those in 4-ZGNR-A-(c) at −0.2 V within bias window, which induces much lower current at 0.2 V than −0.2 V. When the bias is changed from −0.2 V to −0.4 V, the region with big transmission coefficients are also widened in the increased bias window. So, the current value increases from 4.96 μA to 6.77 μA. However, when the bias is increased from 0.2 V to 0.4 V, the transmission coefficients near the right chemical potential decrease obviously. Though the low transmission region also widens as the bias voltage increases, the increased low transmission region cannot compensate for the loss. Therefore, the current value decreases from 2.11 μA to 1.44 μA, leading to the appearance of NDR at positive biases and large rectifying ratio. When the bias is changed from 0.4 V to 0.8 V and −0.4 V to −0.8 V, although the increased bias window both contains lesser transmission coefficients, the strength of the scattering in the structure with positive bias is much stronger than that with negative bias, giving larger rectifying ratio. The rectifying effect can be understood with the help of the schematic LDOSs in these structures. Clearly from the insets in Fig. 4, the distribution of LDOSs at negative bias is more symmetric than that at positive bias in the same structures, which means that the carrier can more easily pass through the base-ZGNR coupling systems at negative bias, and forming obvious rectifying effect. Clearly, comparing the rectification ratio RR in 4-ZGNR-A-(c), the most striking difference is that the rectification peak of RR in 4-ZGNR-T-(c) and 4-ZGNR-G-(c) occurs at big bias [see Fig. 2(c)]. The transport spectra under different negative bias shown in Fig. 4 illustrate this interesting phenomenon. Obviously in Figs. 4(e)–4(g), the transmission peak only exists at low energy with negative bias in 4-ZGNR-A-(c). So, the rectification peak just exists at low bias. However, the transmission peak only exists at large energy of electron with negative bias in 4-ZGNR-T-(c) and 4-ZGNR-G-(c) [see Figs. 4(d) and 4(h)], which results in that big RR only happens at large bias.
Figure 4.Panels (a)–(c) [(e)–(g)] describe the electron transmission spectra at bias voltages 0.2 V, 0.4 V, and 0.8 V (at bias −0.2 V, −0.4 V, and −0.8 V). Purple solid and red solid curves in panels (a)–(c) and (e)–(g) correspond to the structures of pristine 4-ZGNR and 4-ZGNR-A-(c). The insets of panels (a)–(b) and (e)–(f) show the LDOSs of 4-ZGNR-A-(c) at
It is known that the covalent bond is generally more permanent in nature than the H-bond. Some studies focused on single-molecule devices rely on covalent bond coupling. While many studies involving using recognition tunnelling to identify DNA nucleotides rely on hydrogen bonds. It would be very interesting and important to do a comparison analysis contrasting their electrical transport properties. So, as a comparison with the current in 4-ZGNR-I-(b) (I = A, C, G, and T)), we study I–V curves of 4-ZGNR-A-(h), 4-ZGNR-C-(h), 4-ZGNR-G-(h), and 4-ZGNR-T-(h). (note that the bond between the bases and electrodes is H-bond in 4-ZGNR-I-(h) (I = A, C, G, and T)). It is found from Fig. 5(a) that the current values in 4-ZGNR-I-(h) are less than 0.5 nA even the voltage reaches 2 V, which are similar to previous DNA sequencing studies[
Figure 5.Description of the currents as a function of the applied bias of 4-ZGNR-
Meanwhile, it is also noted that although the current is low and there is no negative differential effect, the current I4-ZGNR-T-(h) > I4-ZGNR-C-(h) > I4-ZGNR-A-(h) > I4-ZGNR-G-(h), which means that the base can be easily distinguished by the current value. Then, we analyze the I–V curves of 4-ZGNR-I-(f) (I = A, C, G, and T)). In these structures, the bases are designed to couple with deoxynucleotides and then covalently bonded with left and right N-ZGNR electrodes. Figure 5(b) shows that the current I4-ZGNR-I-(f) > I4-ZGNR-I-(h). Larger currents may be responsible for the stronger interaction, namely the covalent bonds between the left and right N-ZGNR electrodes. To confirm this hypothesis, the LDOS of 4-ZGNR-I-(f) are plotted in the insets of Fig. 5(b). It is Clearly seen from the inserts in Fig. 5(b) that, due to the existence of electronic states in more atom positions of 4-ZGNR-I-(f), this well-proportioned distribution of LDOS is advantageous for electron going through the system more smoothly. As a result, the current in 4-ZGNR-I-(f) is larger than that in 4-ZGNR-I-(h). In addition, although the bonds between the scattering region and the left (right) electrodes are covalent in 4-ZGNR-I-(b) and 4-ZGNR-I-(f), due to more atoms in the scattering region in 4-ZGNR-I-(f), the electrons are more easily scattered by the scattering region, which induces the current I4-ZGNR-i-(b) > I4-ZGNR-i-(f).
Clearly from Figs. 2(a) and 2(c), another impressive characteristic is the currents enhancement in 4-ZGNR-A-(a) and 4-ZGNR-A-(c), and the currents are even much bigger than those in pristine 4-ZGNR at some biases. So, we judge that the coupling between the base A and ZGNR should be excellent thermoelectric performance. Recently, the current–voltage characteristics is measured steadily by experiment at room temperatures in ZGNR–molecule–ZGNR devices. The room temperature is experimentally feasible to study thermoelectric performance in base-ZGNR coupling devices. So in the following study, we focus on the thermoelectric performance in this coupling system in Fig. 6 at room temperatures. It can be found that in perfect 4-ZGNR, the phonon transmission coefficient is of quantum character, and the phonons can be transported perfectly without scattering. While the phonon transmission coefficients of 4-ZGNR-A-(d) and N-ZGNR-A-(e) (N = 4 and 5) exhibit many peak-dip structures, and are much lower than those of the pristine 4-ZGNR due to the structure scattering. So, the thermal conductances in these structures are decreased obviously. In order to measure the reduction degree in the thermal conductance of N-ZGNR-A-i, the ratio, ζi = ki/kN–ZGNR (i is N-ZGNR-A-(d) or N-ZGNR-A-(e) (N = 4 and 5)), is defined. Clearly from the inset of Fig. 6(b), the ratio is lower than 0.1 in the temperature 0 ↔ 500 K in 4-AGNR-A-(d), and even lower 0.05 in N-ZGNR-A-(e) (N = 4 and 5). The very low thermal condctances can bring a strong advantage to high ZT discussed later. In addition, ZT also depends strongly on the seebeck coefficient S. It can be found from the inset of Fig. 6(c) that the electron transmission function for perfect 4-ZGNR shows some smooth stepwise platforms, which implies that electrons can pass through the pristine 4-ZGNR without any scattering. However, when the base A exists in scattering region, Similar to phonon transport, the stepwise platforms are dramatically destroyed, and the electron transmission coefficients show some peak-dip structures. Especially, theses electronic transmission mutates induce the high peak of seebeck coefficient S, which is also fully consistent with the Cutler–Mott formula[
Figure 6.Panels (a), (b), (c), and (d) describe the phonon transmission, thermal conductance, Seebeck coefficient, and
Although the base A can induce low phonon thermal conductance kph, electric thermal conductance ke, electric conductance σ, and also high peak S, the S2σ T / (kph + ke) will win the competition with σ. As a consequence, the ZT = S2σ T / (kph + ke) will reache a much bigger value in N-ZGNR-A-(i) than that in pristine N-ZGNR, and the ZTmax hits 1.6 at temperature 200 K in 4-ZGNR-A-(e), which is much bigger than the maximum value ( = 0.09) of ZT in perfect 4-ZGNR pristine.[
4. Conclusion and perspectives
In summary, we investigated the electronic, thermal, and thermoelectric properties in the A, G, C, and T bases perpendicularly coupling between two N-ZGNR electrodes by using nonequilibrium Green’s functions in combination with the density-functional theory. The results show that the currents in different base-ZGNR coupling systems display different current bias voltage characteristics, and the base-ZGNR coupling system can present large RE and NDR effects. These interesting results are well explained in terms of the transmission spectrum and the spatial distribution of LDOS. Moreover, due to the fluctuations of electron transmission and the reduction of the phonon thermal conductance, the ZT is improved significantly: the ZTmax will be over 1.4 at room temperature, and over 1.6 at 200 K. Our results will be helpful for designing and fabrication of high-performance switches, memories, and thermoelectric devices.
[1] N J Tao. Nat. Nanotechnol., 1, 173(2006).
[2] M D Angione, R Pilolli, S Cotrone et al. Mater. Today., 14, 424(2011).
[3] S V Aradhya, L Venkataraman. Nat. Nanotechnol., 8, 399(2013).
[4] S K Yee, J Sun, P Darancet, T D Tilley, A Majumdar, J B Neaton. ACS Nano, 5, 9256(2011).
[5] B Capozzi, J Xia, O Adak et al. Nat. Nanotechnol., 10, 522(2015).
[6] H Cao, J Ma, Y Luo. Nano Res., 3, 350(2010).
[7] L Chen, Z Hu, A Zhao, B Wang, Y Luo, J Yang. Phys. Rev. Lett., 99(2007).
[8] H Geng, Y Hu, Z Shuai, K Xia, H Gao, K Chen. J. Phys. Chem. C, 111(2007).
[9] Z Q Fan, Z H Zhang, X Q Deng, G P Tang, C H Yang, L Sun, H L Zhu. Carbon, 98, 179(2016).
[10] G Kuang, S Z Chen, W Wang, T Lin, K Chen, X Shang, P N Liu, N Lin. J. Am. Chem. Soc., 138(2016).
[11] D Wu, X H Cao, S Z Chen, L M Tang, Y X Feng, K Q Chen, W X Zhou. J. Mater. Chem. A., 7(2019).
[12] Y Y Liu, Y J Zeng, P Z Jia et al. J. Phys.: Condens. Matter, 30(2018).
[13] Q Li, L Tang, C Zhang et al. Appl. Phys. Lett., 111(2017).
[14] D Wu, X H Cao, P Z Jia et al. Sci. China-Phys. Mech. Astron., 63(2020).
[15] Y J Zeng, D Wu, X H Cao et al. J. Mater. Chem. A, 8(2020).
[16] L Liang, V Meunier. Appl. Phys. Lett., 102(2013).
[17] Y Xu, Z Li, W Duan. Small, 10, 2182(2014).
[18] J He, T M Tritt. Science, 357, 1369(2017).
[19] R B Gao, X F Peng, X T Jiang, X H Tan, M Q Long. Org. Electron., 67, 57(2019).
[20] P Krsti@@@, B Ashcroft, S Lindsay. Nanotechnology, 26(2015).
[21] B Russ, A Glaudell, J J Urban, M L Chabinyc, R A Segalman. Nat. Rev. Mater., 1(2016).
[22] Q Zhang, Y Sun, W Xu, D Zhu. Adv. Mater., 26, 6829(2014).
[23] Q H Wu, P Zhao, D S Liu, S J Li, G Chen. Org. Electron., 15, 3615(2014).
[24] J Chen, J H Walther, P Koumoutsakos. Nano Lett., 14, 819(2014).
[25] X Liu, G Zhang, Y W Zhang. Nano Lett., 16, 4954(2016).
[26] X F Peng, KQ Chen, XJ Wang, S H Tan. Carbon, 100, 36(2016).
[27] R Lv, G Chen, Q Li, A McCreary et al. Proc. Natl. Acad. Sci. USA, 112(2015).
[28] Y F Xu, Z B Liu, X L Zhang, Y Wang, J G Tian, Y Huang, Y F Ma, X Y Zhang, . Adv. Mater., 21, 1275(2009).
[29] J Zeng, K Q Chen, Y X Tong. Carbon, 127, 611(2018).
[30] N Xiao, X Dong, L Song, D Liu et al. ACS Nano, 5, 2749(2011).
[31] P H Hang, M S Bahramy, N Nagaosa, B K Nikoli@@@. Nano Lett., 14, 3779(2014).
[32] S H Tan, K Q Chen. Carbon, 94, 942(2015).
[33] S J Heerema, C Dekker. Nat. Nanotechnol., 11, 127(2016).
[34] J Zeng, K Q Chen, J He, Z Q Fan, X J Zhang. J. Appl. Phys., 109(2011).
[35] J Zeng, K Q Chen, J He, X J Zhang, C Q Sun. J. Phys. Chem. C, 115(2011).
[36] Y He, M Garnica, F Bischoff, J Ducke, M L Bocquet, M Batzill, W Auwärter, J V Barth. Nat. Chem., 9, 33(2017).
[37] Q Xu, G Scuri, C Mathewson, P Kim, C Nuckolls, D Bouilly. Nano Lett., 17, 5335(2017).
[38] F B Baghsiyahi, A Akhtar, M Yeganeh. Int. J. Mod. Phys. B, 32(2018).
[39] M Büttiker, Y Imry, R Landauer, S Pinhas. Phys. Rev. B, 31, 6207(1985).
[40] J Taylor, H Guo, J Wang. Phys. Rev. B, 63(2001).
[41] J Taylor, H Guo, J Wang. Phys. Rev. B, 63(2001).
[42] M Brandbyge, J L Mozos, P Ordejón, J Taylor, K Stokbro. Phys. Rev. B, 65(2002).
[43] J W Jiang, J S Wang, B Li. J. Appl. Phys., 109(2011).
[44] J S Wang, J Wang, J T Lü. Eur. Phys. J. B, 62, 381(2008).
[45] L Shen, M Zeng, S Li, M B Sullivan, Y P Feng. Phys. Rev. B, 86(2012).
[46] W Y Kim, K S Kim. Nat. Nanotech., 3, 408(2008).
[47] Y W Son, M L Cohen, S G Louie. Nature, 444, 347(2006).
[48] P P Zhang, S H Tan, M Q Long, X F Peng. Appl. Phys. Express, 12(2019).
[49] Z Q Wang, F Tang, M M Dong et al. Chin. Phys. B, 29(2020).
[50] Z Q Fan, Z H Zhang, F Xie et al. Org. Electron., 18, 101(2015).
[51] X K Chen, K Q Chen. J. Phys.: Condens. Matter, 32(2020).
[52] G P Zhang, Y Q Mu, J M Zhao et al. Physica E, 109, 1(2019).
[53] Y Q Mu, J M Zhao, L Y Chen et al. Org. Electron., 81(2020).
[54] Z Li, H Qian, J Wu, B L Gu, W H Duan. Phys. Rev. Lett., 100(2008).
[55] J Im, S Sen, S Lindsay, P Zhang. ACS Nano, 12, 7067(2018).
[56] J Shendure, S Balasubramanian, G M Church et al. Nature, 550, 345(2017).
[57] S Chang, H S Shuo, J He, F Liang, P Zhang, S Li. Nano Lett., 10, 1070(2010).
[58] S Huang, J He, S Chang, P Zhang, F Liang, S Li, X Chen, O Sankey, S Lindsay. Nano Lett., 5, 868(2010).
[59] M Tsutsui, M Taniguchi, K Yokota, T Kawai. Nat. Nanotechnol., 5, 286(2010).
[60] C N Pan, Z X Xie, L M Tang, K Q Chen. Appl. Phys. Lett., 101(2012).
Get Citation
Copy Citation Text
Peng-Peng Zhang, Shi-Hua Tan, Xiao-Fang Peng, Meng-Qiu Long. Covalent coupling of DNA bases with graphene nanoribbon electrodes: Negative differential resistance, rectifying, and thermoelectric performance[J]. Chinese Physics B, 2020, 29(10):
Received: Jun. 16, 2020
Accepted: --
Published Online: Apr. 21, 2021
The Author Email: Shi-Hua Tan (xiaofangpeng11@163.com)